Job Description P21151 Confidence 100.00% Date Thu Jan 5 11:37:50 GMT 2012 Rank 39 Aligned Residues 277 % Identity 20% Template c3hhdC_ PDB info PDB header:transferase, hydrolase Chain: C: PDB Molecule:fatty acid synthase; PDBTitle: structure of the human fatty acid synthase ks-mat didomain2 as a framework for inhibitor design. Resolution 2.15 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																			.	.	70	.
Predicted Secondary structure																																								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	R	S	K	G	G	A	F	R	N	V	R	A	E	D	L	S	A	H	L	M	R	S	L	L	A	R	N	P	A	L	E	A	A	A	L	D	.	.	.	.	D	I	Y	W	G	C	V	Q	Q	T	L	E	Q	G	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	R	N
Query Conservation																																								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.											.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		F	G	V	H	P	K	Q	A	H	T	M	D	P	Q	L	R	L	L	L	E	V	T	Y	E	A	I	V	.	D	G	G	I	N	P	D	S	L	R	G	T	H	T	G	V	W	V	G	V	S	G	S	E	T	S	E	A	L	S	R	D	P	E	T	L	V	G	Y	S	M	V	G	C	Q	R	A	M	M	A	N	R
Template Known Secondary structure		T	T								T	S																	.		T	T			G	G	G	G	T	T	S																		T	S		T	T	T			T							S	T	T
Template Predicted Secondary structure																													.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	L	A	E	V	P	H	S	V	P	A	V	T	V	N	R	L	C	G	S	S	M	Q	A	L	H	D	A	A	R	M	I	M	T	G	D	A	Q	A	C	L	V	G	G	V	E	H	M	G	H	V	P	M	S	H	G	V	D	F	H	P	G	L	S	R	N	V	A	K	A	A	G	M	M	G	L	T	A
Query Conservation
Alig confidence											.	.																																																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.																																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	F	F	F	D	F	R	G	.	.	P	S	I	A	L	D	T	A	C	S	S	S	L	M	A	L	Q	N	A	Y	Q	A	I	H	S	G	Q	C	P	A	A	I	V	G	G	I	N	V	L	L	K	P	N	T	S	V	Q	F	L	R	L	G	M	L	S	P	E	G	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T			S	.	.								G	G	G															T	T	S		S																							T		B		T	T	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.																																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	L	A	R	M	H	G	I	S	R	E	M	Q	D	A	F	A	A	R	S	H	A	R	A	W	A	A	T	Q	S	A	A	F	K	N	E	I	I	P	T	G	G	H	D	A	D	G	V	L	K	Q	F	N	Y	D	E	V	I	R	P	E	T	T	V	E	A	L	A	T	L	R	P	A	F	D	P	V	N	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	C	K	A	F	D	T	A	G	N	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	B	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																							211	.	.	.	.	.	.	.	.	220	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.							.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		M	V	T	A	G	T	S	S	A	L	S	D	G	A	A	A	M	L	V	M	S	E	S	R	A	H	E	L	G	L	K	P	R	A	R	V	R	S	M	A	V	V	G	C	D	.	.	.	.	.	.	P	S	I	M	G	Y	G	P	V	P	A	S	K	L	A	L	K	K	A	G	L	S	A	S	D	I	G	V	F
Query Conservation																																															.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																	.	.	.	.																	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		Y	C	.	.	.	.	.	.	.	R	S	E	G	V	V	A	V	L	L	T	K	K	S	L	A	.	.	.	.	R	R	V	Y	A	T	I	L	N	A	G	T	N	T	D	G	F	K	E	Q	G	V	T	F	P	S	G	D	I	Q	E	Q	L	I	R	S	L	Y	Q	S	A	G	V	A	P	E	S	F	E	Y	I
Template Known Secondary structure		B		.	.	.	.	.	.	.	B	B											G	G	G		.	.	.	.	S	S		S															T	T		T	T	S																		T			G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
		222	.								.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		306	.	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure									.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	N	E	A	F	A	.	.	.	.	A	Q	I	L	P	C	I	K	D	L	G	L	I	E	Q	I	D	E	K	I	N	L	N	G	G	A	I	A	L	G	H	P	L	G	C	S	G	A	R	I	S	T	T	L	L	N	L	M	E	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.											.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		E	A	H	G	T	G	T	K	V	G	D	P	Q	E	L	N	G	I	T	R	A	.	L	C	A	T	R	Q	E	P	L	L	I	G	S	T	K	S	N	M	G	H	P	E	P	A	S	G	L	A	A	L	A	K	V	L	L	S	L	E	H	G	L	W	A	P	N	L	H	F	H	S	P	N	P	E	I	P	A	L
Template Known Secondary structure									T	T													.		S	S	S		S	S							T						B		G	G	G																T	B					S	S			S	B		T	T
Template Predicted Secondary structure																							.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
																364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	Q	F	G	L	A	T	M	C	I	G	L	G	Q	G	I	A	T	V	F	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	G	R	L	Q	V	V	D	Q	P	L	P	V	R	G	G	N	V	G	I	N	S	F	G	F	G	G	S	N	V	H	I	I	L	R
Template Known Secondary structure				T	S						S			B			S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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