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Job DescriptionP21151
Confidence100.00%DateThu Jan 5 11:37:50 GMT 2012
Rank21Aligned Residues299
% Identity27%Templatec2gfvA_
PDB info PDB header:transferaseChain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 2; PDBTitle: structure of e. coli fabf (kasii) c163q mutant
Resolution2.29 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10 ..... ....20.........30......
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Query Sequence  EQVVIVDAI. RTPMG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RSKGGAFRNVRAEDLSAHLMR
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Template Sequence  RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGV
Template Known Secondary structure 

BTTBSSTT




SS

TT
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TT


TTTS
TTS
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   37..40.........50. ........60.. .......70.........80.......
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Query Sequence  SLLARNPALEAAALD. . . . DIYWGCVQQTL. . . . . . . . . . . . . . . . . . . . . . . . . EQGFNIARNAALLAEVPHSVPAVTV
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Template Sequence  QAMQ. DSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRG. . PSISI
Template Known Secondary structure  .T



TTTGGG
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GGGS
TTSTTTT

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   83... ...90.........100.........110.........120.........130.........140.........150.... .....
 
   88.90.........100.........110.........120.........130.........140.........150.........160.......
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Query Sequence  NRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGISREMQDA
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Template Sequence  ATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA. . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

GGGTS
S


STT
B


TT
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   160.........170.........180.........190.........200.........210.......
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  FAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATLRPAFDPVNGMVTAGTSSALSDGAAA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ASRPWDKERDGFV. . . . . . . LGDGAGM
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TTBTT

SB
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   218.220.........230 .......
 
   248.250.........260.........270..... ....280.........290.........300.........310... .....
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Query Sequence  MLVMSESRAHELGLKPRARVRSMAVVGC. . . . . DPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAA. . . . QILPC
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Template Sequence  LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQA
Template Known Secondary structure  T





S
SSS

TT
T

GGG





S
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   319320.........330.........340.........350.........360... ......370
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Query Sequence  IKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK. . . . . . . . . . . . . . . . . . . . . . . . . . . . DVQFGLA
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Template Sequence  VKTI. FGEAA. SRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLC
Template Known Secondary structure  .GGGG.TTS
T
B
GGGS


BTT
SSB
TT

SB

BSS

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   318.320. ..... ...330.........340.........350.........360.........370.........380.........390.....
 
   371........380.......
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Query Sequence  TMCIGLGQGIATVFERV
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Template Sequence  NSFGFGGTNGSLIFKKI
Template Known Secondary structure  GGG

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   396...400.........410..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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