Return to main results Retrieve Phyre Job Id

Job DescriptionP77746
Confidence55.89%DateThu Jan 5 12:32:26 GMT 2012
Rank300Aligned Residues198
% Identity8%Templated1p99a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   99100.........110.........120.........130.........140.........150.........160.........170........
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Query Sequence  NFIIYGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICS
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Template Sequence  KVTIGVASNDTKAW. . . EKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTT
Template Known Secondary structure 
SSS

...GGGT


SSTTSTTSSS
TT

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   40.........50... ......60.........70.........80.........90.........100.........110......
 
   179180.... .....190.........200.........210.........220 .........230.......
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Query Sequence  NRHPRI. . . TDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFM. . . . . . . . . . . . . . . . . . NRKISFRGSSLLTIINS
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Template Sequence  VLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTAR
Template Known Secondary structure 



SS
S
GGG

TT

STTS

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TT

GGG
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GGGTTG
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   117..120.........130.........140.........150.........160.........170.........180.........190......
 
   238.240.........250.........260.... .....270.........280.........290....... ..
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Query Sequence  IAVTDLLGIVPYELYNSYRDFLNLKEI. . . . KLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLN. . ES
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Template Sequence  ALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKEA
Template Known Secondary structure  GGGTSS
TT

TTTS
S


SSGGGGGGGGGTT
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   197..200.........210.........220.........230.........240.........250.........260....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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