Job Description P77746 Confidence 96.60% Date Thu Jan 5 12:32:26 GMT 2012 Rank 101 Aligned Residues 83 % Identity 18% Template c3cuoB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav; PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10													.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		M	A	N	L	Y	D	L	K	K	F	.	.	.	.	.	.	.	.	.	.	.	.	D	L	N	L	L	V	I	F	E	C	I	Y	Q	H	L	.	.	S	I	S	K	A	A	E	S	L	Y	I	T	P	S	A	V	S	Q	S	L	Q	R	L	R	A	Q	F	N	D	P	L	F	I	R	S	G	K	G	I	A	P
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																.	.																											.
Template Conservation																																																																			.
Template Sequence		M	T	E	L	A	Q	L	Q	A	S	A	E	Q	A	A	A	L	L	K	A	M	S	H	P	K	R	L	L	I	L	C	M	L	S	G	S	P	G	T	S	A	G	E	L	T	R	I	T	G	L	S	A	S	A	T	S	Q	H	L	A	R	M	R	D	E	.	G	L	I	D	S	Q	R	D	A	Q	R	I	L	Y
Template Known Secondary structure									G	G	G											T		S											T	T		S																													.	T	S							S	S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	T	G	L	N	L	H	H	H	L	E	K	N	L	R	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	K	N	E	A	V	N	A	I	I	A	T	L	K	N	V	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions