Job Description P77746 Confidence 99.46% Date Thu Jan 5 12:32:26 GMT 2012 Rank 36 Aligned Residues 181 % Identity 13% Template c2qsxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus Resolution 1.64 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	I	Y	G	P	Q	L	I	S	C	S	N	N	S	M	L	I	R	C	L	R	Q	D	S	S	V	E	I	E	C	H	D	I	L	M	S	A	E	N	A	E	E	L	L	V	H	R	K	A	D	L	V	I	T	Q	M	P	V	I	S	R	S	V	I	C	M	P	L	H	T	I	R	N	T	L	I	C	S	N
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.
Template Sequence		L	V	V	D	V	T	P	S	F	A	S	L	W	L	V	P	N	I	N	D	F	H	Q	R	H	P	N	I	R	V	K	I	L	T	G	D	G	A	V	.	.	.	.	.	.	.	.	G	E	S	D	L	H	V	R	C	L	P	L	S	T	H	Y	E	Y	S	Q	L	L	C	E	E	T	L	L	L	I	G	N	T
Template Known Secondary structure														T													T	T										S			.	.	.	.	.	.	.	.				S								S		S			T	T															T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	P	R	I	T	D	N	S	T	Y	E	Q	I	M	A	E	E	F	T	Q	L	I	S	K	S	A	G	V	D	D	I	Q	M	E	I	D	E	R	F	M	N	R	K	I	S	F	R	G	S	S	L	L	T	I	I	N	S	I	A	V	T	D	L	L	G	I	V	P	Y	E	L	Y	N	S	Y	R	D	F	L
Query Conservation
Alig confidence					.	.	.	.	.	.												.	.	.	.
Template Conservation					.	.	.	.	.	.												.	.	.	.
Template Sequence		N	L	P	.	.	.	.	.	.	K	N	Q	A	I	S	H	Y	P	F	I	.	.	.	.	P	Q	T	T	R	P	Q	L	W	E	Q	F	K	Q	E	N	D	I	T	Y	H	S	V	G	F	E	H	F	Y	L	A	C	E	A	V	R	X	E	K	G	L	A	L	L	P	D	F	X	A	Q	F	S	I	L	R	G
Template Known Secondary structure		T	S		.	.	.	.	.	.				G	G	G	G	S		B		.	.	.	.		B	T	T		T														B		S			B	S	S										T	T			B														T	T
Template Predicted Secondary structure					.	.	.	.	.	.												.	.	.	.
Template SS confidence
		94	.	.							.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	K	E	I	K	L	E	H	P	L	P	S	I	K	L	Y	I	S	Y	N	K	S	S	L	N	N	L	V	F	S	R	F	I	D	R	L	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	Q	H	I	G	N	L	K	L	H	S	G	Y	G	Y	Y	V	V	I	P	N	F	R	L	T	S	R	K	V	A	L	F	H	D	W	L	K	D
Template Known Secondary structure		S																					G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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