Job Description P77746 Confidence 100.00% Date Thu Jan 5 12:32:26 GMT 2012 Rank 5 Aligned Residues 288 % Identity 13% Template c1iz1B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator Resolution 2.50 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	L	N	L	L	V	I	F	E	C	I	Y	Q	H	L	S	I	S	K	A	A	E	S	L	Y	I	T	P	S	A	V	S	Q	S	L	Q	R	L	R	A	Q	F	N	D	P	L	F	I	R	S	G	K	G	I	A	P	T	T	T	G	L	N	L	H	H	H	L	E	K	N	L	R	G	L	E	Q	T	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	E	F	R	Q	L	K	Y	F	I	A	V	A	E	A	G	N	M	A	A	A	A	K	R	L	H	V	S	Q	P	P	I	T	R	Q	M	Q	A	L	E	A	D	L	G	V	V	L	L	E	R	S	H	R	G	I	E	L	T	A	A	G	H	A	F	L	E	D	A	R	R	I	L	E	L	A	G	R	S	G	D
Template Known Secondary structure																		S									T	S																	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		I	V	N	K	.	.	S	E	L	K	K	N	F	I	I	Y	G	P	Q	L	I	S	C	S	N	N	S	M	L	I	R	C	L	R	Q	D	S	S	V	E	I	E	C	H	D	I	L	M	S	A	E	N	A	E	E	L	L	V	H	R	K	A	D	L	V	I	T	Q	M	P	V	I	S	R	S	V	I	C	M	P
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		R	S	R	A	A	A	R	G	D	V	G	E	L	S	V	A	Y	F	G	T	P	I	Y	R	S	L	P	L	L	L	R	A	F	L	T	S	T	P	T	A	T	V	S	L	T	H	M	T	K	D	E	Q	V	E	G	L	L	A	G	T	I	H	V	G	F	S	R	F	F	P	R	H	P	G	I	E	I	V	N	I
Template Known Secondary structure									T	S	S									S	G	G	G	G	T													S	T	T																				T	S		S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		L	H	T	I	R	N	T	L	I	C	S	N	R	H	P	R	I	T	D	N	S	T	Y	E	Q	I	M	A	E	E	F	T	Q	L	I	S	K	S	A	.	.	G	V	D	D	I	Q	M	E	I	D	E	R	F	M	N	R	K	I	S	F	R	G	S	S	L	L	T	I	I	N	S	I	A	V	T	D	L	L	G
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		A	Q	E	D	L	Y	L	A	V	H	R	S	Q	S	G	K	F	G	K	T	C	K	L	A	D	L	R	A	V	E	L	T	L	F	P	R	G	G	R	P	S	F	A	D	E	V	I	G	L	F	K	H	A	G	I	E	P	R	I	A	R	V	V	E	D	A	T	A	A	L	A	L	T	M	A	G	A	A	S	S
Template Known Secondary structure												G	G	G	G	G	G	T	T	T				G	G	G	G	T	T	S							S	S	S	S	S														T										S	S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	P	Y	E	L	Y	N	S	Y	R	D	F	L	N	L	K	E	I	K	L	E	H	P	L	P	S	I	K	L	Y	I	S	Y	N	K	S	S	L	N	N	L	V	F	S	R	F	I	D	R	L	N	E	S	F
Query Conservation
Alig confidence														.	.																									.
Template Conservation														.	.																									.
Template Sequence		I	V	P	A	S	V	A	A	I	R	W	P	.	.	D	I	A	F	A	R	I	V	G	T	R	V	K	V	P	I	S	C	I	F	R	K	E	K	.	Q	P	P	I	L	A	R	F	V	E	H	V	R	R	S	A
Template Known Secondary structure										S			T	.	.	T									S	S											S	S	S	.																T
Template Predicted Secondary structure														.	.																									.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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