Job Description P0ACI3 Confidence 98.49% Date Thu Jan 5 11:18:15 GMT 2012 Rank 92 Aligned Residues 193 % Identity 11% Template d3ckma1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.35

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		7	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																										.	.																												.	.	.
Query SS confidence													.	.	.																										.	.																												.	.	.
Query Sequence		R	I	T	L	L	F	N	A	N	K	A	.	.	.	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	.	.	E	D	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	.	.	.	E	Q	A	L	A	D	V	D	V
Query Conservation													.	.	.																										.	.																												.	.	.
Alig confidence													.	.	.																										.	.																												.	.	.
Template Conservation
Template Sequence		Q	I	G	L	L	L	P	L	S	G	D	G	Q	I	L	G	T	T	I	Q	S	G	F	N	D	A	K	G	N	S	T	I	P	V	Q	V	F	D	T	S	X	N	S	V	Q	D	I	I	A	Q	A	K	Q	A	G	I	K	T	L	V	G	P	L	L	K	Q	N	L	D	V	I	L	A	D	P	A	Q	I	Q	G
Template Known Secondary structure										S	S	T	T																T	T			S							T	T	T	S												T	T									S											G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q
Query Conservation
Alig confidence																																																	.	.	.	.
Template Conservation																																																	.	.	.	.
Template Sequence		X	D	V	L	A	L	N	A	T	P	N	S	R	A	I	P	Q	L	C	Y	Y	G	L	S	P	E	D	E	A	E	S	A	A	N	K	X	W	N	D	G	V	R	N	P	L	V	A	.	.	.	.	X	P	Q	N	D	L	G	Q	R	V	G	N	A	F	N	V	R	W	Q	Q	L	A	G	T	D	A	N	I	R
Template Known Secondary structure							S				T	T					T	T																						T	T			S					.	.	.	.			S	S																			S	S
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.					.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	.	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P
Query Conservation																																.
Alig confidence																	.	.	.	.	.	.	.									.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		Y	Y	N	L	P	A	D	V	T	Y	F	V	Q	E	N	.	.	.	.	.	.	.	N	S	N	T	T	A	L	Y	A	V	A	S	P	T	E	L	A	E	X	K	G	Y	L	T	N	I	V	P	N	L	A
Template Known Secondary structure				S	S	T	T									S	.	.	.	.	.	.	.		T	T																					T	T	T		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.								.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions