Job Description P0ACI3 Confidence 99.96% Date Thu Jan 5 11:18:15 GMT 2012 Rank 61 Aligned Residues 271 % Identity 15% Template d1gcaa_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.70

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		4	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.
Predicted Secondary structure											.																						.												.	.	.	.																								.	.	.	.
Query SS confidence											.																						.												.	.	.	.																								.	.	.	.
Query Sequence		K	R	H	R	I	T	L	L	F	.	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	.	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	.	.	.	.	Q	I	E	Q	A	L
Query Conservation											.																						.												.	.	.	.																								.	.	.	.
Alig confidence											.																						.												.	.	.	.																								.	.	.	.
Template Conservation
Template Sequence		A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	K	D	G	K	S	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A
Template Known Secondary structure											S		T	T																	T	S	T	T									T	T															T	T		S							S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120													.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	V	D	V	P	I	V	G	V	G	G	S	Y	H	.	.	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	.	.	.	.	.	.	.	.	.	.	.	.	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R
Query Conservation																	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation																																																																						.	.
Template Sequence		R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	V	I	Q	G	D	L	I	A	K	H	W	Q	A	N	Q	G	W	D	L	N	K	D	G	K	I	Q	Y	V	L	L	K	G	.	.	E	P	G	H	P	D	A	E	A	R
Template Known Secondary structure				T	T							S	S									T		T	T																											G	G	G		T	T		S	S	S									.	.	S	T	T
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	.	.	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G
Query Conservation																																														.	.
Alig confidence																		.																												.	.																								.	.	.
Template Conservation																		.																																																					.	.	.
Template Sequence		T	T	Y	V	V	K	E	L	N	D	K	G	I	Q	T	E	.	Q	L	A	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G
Template Known Secondary structure												T	T					.								T	T														T	S	T	T	G	G	G							S	S														T	T	.	.	.		T	T	S
Template Predicted Secondary structure																		.																																																					.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.
		218	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.								.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure												.	.																																				.	.	.	.	.	.	.
Query SS confidence												.	.																																				.	.	.	.	.	.	.
Query Sequence		I	D	N	E	E	L	T	R	Y	L	.	.	S	R	V	A	L	S	S	V	A	Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	.	.	.	.	.	.	.	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T	D	Y	R
Query Conservation												.	.																																				.	.	.	.	.	.	.
Alig confidence												.	.																																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	A	L	P	E	A	L	A	L	V	K	S	G	A	M	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	E	G	K	G	A	A	D	G	T	S	W	K	I	E	N	K	I	V	R	V	P	Y	V	G	V	D	K	D	N	L	S	E	F
Template Known Secondary structure		S	B												T	S	S		B																						T	T	S		T	T	T	T	S					B	T	T											T	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions