Job Description P0ACI3 Confidence 97.38% Date Thu Jan 5 11:18:15 GMT 2012 Rank 107 Aligned Residues 196 % Identity 12% Template c3td9A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution Resolution 1.90 Å

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		7	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.								.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																	.	.	.	.												.	.	.	.	.	.	.																										.	.	.
Query SS confidence													.	.	.																	.	.	.	.												.	.	.	.	.	.	.																										.	.	.
Query Sequence		R	I	T	L	L	F	N	A	N	K	A	.	.	.	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	.	.	.	.	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	.	.	.
Query Conservation													.	.	.																	.	.	.	.												.	.	.	.	.	.	.																										.	.	.
Alig confidence													.	.	.																	.	.	.	.												.	.	.	.	.	.	.																										.	.	.
Template Conservation
Template Sequence		K	I	A	V	I	L	P	X	T	G	G	I	S	A	F	G	R	X	V	W	E	G	I	Q	I	A	H	E	E	K	P	T	V	L	G	E	E	V	E	L	V	L	L	D	T	R	S	E	K	T	E	A	A	N	A	A	A	R	A	I	D	K	E	K	V	L	A	I	I	G	E	V	A	S	A	H	S	L	A	I
Template Known Secondary structure										S	S	T	T																						T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																				.																															.
Query SS confidence																				.																															.
Query Sequence		E	Q	A	L	A	D	V	D	V	P	I	V	G	V	G	G	S	Y	.	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	.	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V
Query Conservation																				.																															.
Alig confidence																				.																															.										.	.	.
Template Conservation																																																													.	.	.
Template Sequence		A	P	I	A	E	E	N	K	V	P	X	V	T	P	A	S	T	N	P	L	V	T	Q	G	R	K	F	V	S	R	V	C	F	I	D	P	F	Q	G	A	A	X	A	V	F	A	Y	K	N	L	G	A	K	R	V	V	V	F	T	.	.	.	D	V	E	Q	D	Y	S	V	G	L	S	N	F	F	I	N	K	F
Template Known Secondary structure								T	T						S	S				G	G	G	T	T	T		S	S				S	S																	T	S										.	.	.		T	T
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P
Query Conservation
Alig confidence																							.	.	.	.	.
Template Conservation																							.	.	.	.	.
Template Sequence		T	E	L	G	G	Q	V	K	R	V	F	F	R	S	G	D	Q	D	F	S	A	.	.	.	.	.	Q	L	S	V	A	X	S	F	N	P	D	A	I	Y	I	T	G	Y	Y	P	E	I	A	L	I	S	R	Q	A	R	Q	L	G	F	T	G	Y
Template Known Secondary structure				T	T										T	T							.	.	.	.	.								T			S						S															T	T			S
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions