Job Description P0ACI3 Confidence 98.52% Date Thu Jan 5 11:18:15 GMT 2012 Rank 90 Aligned Residues 204 % Identity 12% Template c3t0nA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal; PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5 Resolution 2.22 Å

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		7	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.						.	.	.	40	.	.	.	.								.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.
Predicted Secondary structure											.	.	.																						.	.	.	.	.									.	.	.	.	.	.	.																								.	.	.
Query SS confidence											.	.	.																						.	.	.	.	.									.	.	.	.	.	.	.																								.	.	.
Query Sequence		R	I	T	L	L	F	N	A	N	.	.	.	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	.	.	.	.	.	W	D	I	F	I	E	E	D	.	.	.	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	.	.	.	Q
Query Conservation											.	.	.																						.	.	.	.	.									.	.	.	.	.	.	.																								.	.	.
Alig confidence											.	.	.																						.	.	.	.	.									.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		K	V	G	L	I	V	P	X	T	G	G	Q	A	S	T	G	K	Q	I	D	N	A	I	K	L	Y	I	K	K	H	G	D	T	V	A	G	K	K	I	E	V	I	L	K	D	D	A	A	I	P	D	N	T	K	R	L	A	Q	E	L	I	V	N	D	K	V	N	V	I	A	G	F	G	I	T	P	A	A	L	A
Template Known Secondary structure									S	S	S	T	T																				S			T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		I	E	Q	A	L	A	D	V	D	V	P	I	V	G	.	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V
Query Conservation																.
Alig confidence																.																																												.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		A	A	P	L	A	T	Q	A	K	V	P	E	I	V	X	A	A	G	T	S	I	I	T	E	R	S	P	Y	I	V	R	T	S	F	T	L	A	Q	S	S	I	I	I	G	D	W	A	A	K	N	G	I	K	K	V	A	T	L	.	.	.	.	T	S	D	Y	A	P	G	N	D	A	L	A	F	F	K	E	R	F
Template Known Secondary structure										T						S	S				G	G	G	G	G	G		T	T				S	S																	T	T								.	.	.	.			S	S
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	.	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N
Query Conservation																																											.
Alig confidence																															.	.	.	.	.								.																					.
Template Conservation																															.	.	.	.	.																													.
Template Sequence		T	A	G	G	G	E	I	V	E	E	I	K	V	P	L	A	N	P	D	F	A	P	F	L	Q	R	X	K	D	.	.	.	.	.	A	K	P	D	A	X	F	V	F	V	P	A	G	Q	G	G	N	F	X	K	Q	F	A	E	R	G	L	D	.	K	S	G	I	K	V	I	G	P	G	D
Template Known Secondary structure				T	T											S	S	S													.	.	.	.	.	S			S								T	T												T	T	G	G	.	G	T	T							G	G
Template Predicted Secondary structure																															.	.	.	.	.																													.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions