Job Description P0ACI3 Confidence 97.11% Date Thu Jan 5 11:18:15 GMT 2012 Rank 109 Aligned Residues 205 % Identity 11% Template c3q41B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) Resolution 3.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.								.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		T	K	R	H	R	I	T	L	L	F	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	.	.	.	.	.	.	.	E	E	D	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	.	.	.	.	.	.	.	.	.
Query Conservation																																									.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Alig confidence													.																												.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		P	K	I	V	N	I	G	A	V	L	S	.	T	R	K	H	E	Q	M	F	R	E	A	V	N	Q	A	N	K	R	H	G	S	W	K	I	Q	L	N	A	T	S	V	T	H	K	P	N	A	I	Q	M	A	L	S	V	C	E	D	L	I	S	S	Q	V	Y	A	I	L	V	S	H	P	P	T	P	N	D	H	F
Template Known Secondary structure												S	.	S																				S	S	S												S	S											T	T	G	G	G											S		T	T	T	T	T
Template Predicted Secondary structure													.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
				67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.																																		.	.	.
Query SS confidence		.	.																																		.	.	.
Query Sequence		.	.	K	Q	I	E	Q	A	L	A	D	V	D	V	P	I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	.	.	.	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y
Query Conservation		.	.																																		.	.	.
Alig confidence		.	.																																		.	.	.																											.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		T	P	T	P	V	S	Y	T	A	G	F	Y	R	I	P	V	L	G	L	T	T	R	M	S	I	Y	S	D	K	S	I	H	L	S	F	L	R	T	V	P	P	Y	S	H	Q	S	S	V	W	F	E	M	M	R	V	Y	N	W	N	H	I	I	L	L	.	.	.	.	V	S	D	D	H	E	G	R	A	A	Q	K
Template Known Secondary structure		T										T	T	T							S				G	G	G	G	S	S	S	S		T	T				S	S			G	G	G												B									.	.	.	.			S	S
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	.	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G
Query Conservation																																																		.
Alig confidence																																					.	.	.	.	.									.
Template Conservation																																					.	.	.	.	.
Template Sequence		R	L	E	T	L	L	E	E	R	E	S	K	A	E	K	V	L	Q	F	D	P	G	T	K	N	V	T	A	L	L	M	E	A	R	E	.	.	.	.	.	L	E	A	R	V	I	I	L	S	A	S	E	D	D	A	A	T	V	Y	R	A	A	A	M	L	N	M	T	G	S	G	Y	V	W	L	V	G
Template Known Secondary structure								T	T	S	S											T	T		S											T	.	.	.	.	.	S	S																						T	T	T		S	S	T	T
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.						.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions