Job Description P0ACI3 Confidence 98.33% Date Thu Jan 5 11:18:15 GMT 2012 Rank 96 Aligned Residues 209 % Identity 10% Template c3n0wA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution Resolution 1.88 Å

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		7	.	.	10	.	.	.	.	.					.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.								.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																		.	.	.	.	.													.	.	.	.	.	.	.																										.
Query SS confidence											.	.	.	.																		.	.	.	.	.													.	.	.	.	.	.	.																										.
Query Sequence		R	I	T	L	L	F	N	A	N	.	.	.	.	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	.	.	.	.	.	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	.
Query Conservation											.	.	.	.																		.	.	.	.	.													.	.	.	.	.	.	.																										.
Alig confidence											.	.	.	.																		.	.	.	.	.													.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		T	L	G	V	L	T	D	X	S	S	V	Y	A	D	S	A	G	K	G	S	V	A	A	V	Q	L	A	I	E	D	V	G	G	K	A	L	G	Q	P	V	K	L	V	S	A	D	Y	Q	X	K	T	D	V	A	L	S	I	A	R	E	W	F	D	R	D	G	V	D	A	I	F	D	V	V	N	S	G	T	A	L
Template Known Secondary structure									S	S	S	T	T	T	T	T	S															T	T	T			T	T											T	T																S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.																	.	.	.
Query SS confidence		.	.																	.	.	.
Query Sequence		.	.	E	Q	A	L	A	D	V	D	V	P	I	V	G	V	G	G	.	.	.	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R
Query Conservation		.	.																	.	.	.
Alig confidence		.	.																	.	.	.																																									.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		A	I	N	N	L	V	K	D	K	K	K	L	A	F	I	T	A	A	A	A	D	Q	I	G	G	T	E	C	N	G	Y	G	I	G	F	L	Y	N	F	T	S	I	V	K	T	V	V	Q	A	Q	L	A	K	G	Y	K	T	W	F	L	X	.	.	.	.	L	P	D	A	A	Y	G	D	L	X	N	A	A	I	R
Template Known Secondary structure											T							S				T	T	T	T	T	T	T			S	S					S																	T	T								.	.	.	.			S	S
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	.	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L
Query Conservation																																														.
Alig confidence																																		.	.	.	.	.								.
Template Conservation																																		.	.	.	.	.
Template Sequence		R	E	L	T	A	G	G	G	Q	I	V	G	S	V	R	F	P	F	E	T	Q	D	F	S	S	Y	L	L	Q	A	K	A	.	.	.	.	.	S	G	A	Q	L	I	V	S	T	S	G	G	A	A	N	I	N	I	X	K	Q	A	R	E	F	G	L	P	S	K	T	Q	K	V	G	G	X	I	D	I	L	T	D
Template Known Secondary structure								T											T	T														.	.	.	.	.		T		S																					T	T		S		S	S							B
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		224
Predicted Secondary structure
Query SS confidence
Query Sequence		T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		259

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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