Job Description P0ACI3 Confidence 100.00% Date Thu Jan 5 11:18:15 GMT 2012 Rank 41 Aligned Residues 269 % Identity 13% Template c3kjxD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi Resolution 2.33 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure													.																															.	.	.	.																				.	.
Query SS confidence													.																															.	.	.	.																				.	.
Query Sequence		K	R	H	R	I	T	L	L	F	N	A	.	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	.	.	F	D	D	K	Q	I	E	Q	A	L	A	D	V
Query Conservation													.																															.	.	.	.																				.	.
Alig confidence													.																															.	.	.	.																				.	.
Template Conservation
Template Sequence		R	V	N	L	V	A	V	I	I	P	S	L	S	N	X	V	F	P	E	V	L	T	G	I	N	Q	V	L	E	D	T	E	L	Q	P	V	V	G	V	T	D	Y	L	P	E	K	E	E	K	V	L	Y	E	X	L	S	W	R	P	S	G	V	I	I	A	G	L	E	H	S	E	A	A	R	A	X	L	D	A	A
Template Known Secondary structure				S							S		S	S	S	S	S													T	T	S	S									T	T														T	T			S							S				S								T
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	P	I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V
Query Conservation
Alig confidence																.	.	.	.																																	.																													.
Template Conservation																.	.	.	.																																	.																													.
Template Sequence		G	I	P	V	V	E	I	X	D	S	D	G	K	P	.	.	.	.	V	D	A	X	V	G	I	S	H	R	R	A	G	R	E	X	A	Q	A	I	L	K	A	G	Y	R	R	I	G	F	X	G	.	T	K	X	P	L	D	Y	R	A	R	K	R	F	E	G	F	T	E	V	L	G	K	N	G	V	E	I	E	.
Template Known Secondary structure		S	S									S	S			.	.	.	.	S	S																					T	T			S						.	S	S	T	T	T																		T	T				S	.
Template Predicted Secondary structure																.	.	.	.																																	.																													.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A	L	S	S	V	A
Query Conservation
Alig confidence																																																																						.
Template Conservation																																																																						.
Template Sequence		D	R	E	F	Y	S	G	G	S	A	L	A	K	G	R	E	X	T	Q	A	X	L	E	R	S	P	D	L	D	F	L	Y	Y	S	N	D	X	I	A	A	G	G	L	L	Y	L	L	E	Q	G	I	D	I	P	G	Q	I	G	L	A	G	F	N	N	V	E	L	L	.	Q	G	L	P	R	K	L	A	T	X	D
Template Known Secondary structure								S																			T	T							S	S														T	T			T	T	T	T						S	B			G	G	G	.	G	G	S	S	S			B			B
Template Predicted Secondary structure																																																																						.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T	D	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	C	R	L	E	I	G	R	K	A	A	E	I	I	A	K	R	L	E	D	P	E	A	E	I	E	T	R	I	T	L	E	P	K	I	S	Y	G	D	T	L	K	R
Template Known Secondary structure																						G	G	G																S	S	S
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions