Job Description P0ACI3 Confidence 100.00% Date Thu Jan 5 11:18:15 GMT 2012 Rank 33 Aligned Residues 250 % Identity 17% Template c3jy6B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis Resolution 1.97 Å

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		6	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.																																	.	.	.	.																				.
Query SS confidence									.																																	.	.	.	.																				.
Query Sequence		H	R	I	T	L	L	F	.	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	.	F	D	D	K	Q	I	E	Q	A	L	A	D	V	D	V	P
Query Conservation									.																																	.	.	.	.																				.
Alig confidence									.																																	.	.	.	.																				.
Template Conservation
Template Sequence		K	L	I	A	V	I	V	A	N	I	D	D	Y	F	S	T	E	L	F	K	G	I	S	S	I	L	E	S	R	G	Y	I	G	V	L	F	D	A	N	A	D	I	E	R	E	K	T	L	L	R	A	I	G	S	R	G	F	D	G	L	I	L	Q	S	F	S	N	P	Q	T	V	Q	E	I	L	H	Q	Q	M	P
Template Known Secondary structure									S		T	T	S															G	G	G	T									T	T															T	T		S						S	S	S										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G
Query Conservation
Alig confidence													.	.	.	.																																		.	.																			.	.	.	.
Template Conservation													.	.	.	.																																		.	.																			.	.	.	.
Template Sequence		V	V	S	V	D	R	E	M	D	A	C	.	.	.	.	P	W	P	Q	V	V	T	D	N	F	E	A	A	K	A	A	T	T	A	F	R	Q	Q	G	Y	Q	H	V	V	V	L	T	S	.	.	E	L	E	L	S	R	T	R	Q	E	R	Y	R	G	I	L	A	A	.	.	.	.	A	Q	D	V	D	V	L	E
Template Known Secondary structure						S				S	S		.	.	.	.	S	S																				T	T	T										.	.		G	G	G													T	T	.	.	.	.		S
Template Predicted Secondary structure													.	.	.	.																																		.	.																			.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A	L	S	S	V	A	Q	G	A
Query Conservation
Alig confidence																																																																					.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		V	S	E	S	S	Y	N	H	S	E	V	H	Q	R	L	T	Q	L	I	T	Q	N	D	Q	K	T	V	A	F	A	L	K	E	R	W	L	L	E	F	F	P	N	L	I	I	S	G	L	I	D	N	Q	T	V	T	A	T	G	F	A	D	T	D	F	I	R	R	.	.	.	M	K	L	T	L	I	T	Q	N	P
Template Known Secondary structure				T	T	S																S	S		S							S	S															T	S			S	S	S						B				T	T	T	T	T	.	.	.
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	M	G	A	S	S	A	E	I	M	L	R	Q	L	A	G	E	K	V	A	P	E	K	M	V	I	P	A
Template Known Secondary structure																	T	T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions