Job Description P0ACI3 Confidence 100.00% Date Thu Jan 5 11:18:15 GMT 2012 Rank 36 Aligned Residues 251 % Identity 12% Template c3jvdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum Resolution 2.30 Å

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		5	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure										.																																	.	.	.
Query SS confidence										.																																	.	.	.
Query Sequence		R	H	R	I	T	L	L	F	.	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	E	Q	A	L	A	D	V	D	V	P	I
Query Conservation										.																																	.	.	.
Alig confidence										.																																	.	.	.																						.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.
Template Sequence		S	A	L	V	G	V	I	V	P	D	L	S	N	E	Y	Y	S	E	S	L	Q	T	I	Q	Q	D	L	K	A	A	G	Y	Q	M	L	V	A	E	A	N	S	V	Q	A	Q	D	V	V	M	E	S	L	I	S	I	Q	A	A	G	I	I	H	V	P	V	.	.	.	.	.	V	G	S	I	A	E	G	I	P	M
Template Known Secondary structure										S		S	S	S																		T										S															T		S								.	.	.	.	.	T	T						S
Template Predicted Secondary structure																																																																			.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.																																				.	.																								.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.																																				.	.																								.	.	.	.
Template Sequence		V	Q	L	T	.	.	.	.	.	.	.	.	R	P	G	F	P	R	V	L	C	D	D	E	A	G	F	F	Q	L	T	E	S	V	L	G	G	S	G	M	N	I	A	A	L	V	G	.	.	E	E	S	L	S	T	T	Q	E	R	M	R	G	I	S	H	A	A	S	I	Y	G	A	.	.	.	.	E	V	T	F
Template Known Secondary structure						.	.	.	.	.	.	.	.				S																					S	S	S								S	.	.		T	T	S																	T	T		.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.																																				.	.																								.	.	.	.
Template SS confidence
		140	.	.	.									.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A	L	S	S	V	A	Q	G	A	R
Query Conservation
Alig confidence																							.																																									.
Template Conservation																							.																																									.
Template Sequence		H	F	G	H	Y	S	V	E	S	G	E	E	M	A	Q	V	V	F	N	N	G	.	L	P	D	A	L	I	V	A	S	P	R	L	M	A	G	V	M	R	A	F	T	R	L	N	V	R	V	P	H	D	V	V	I	G	G	Y	D	D	P	E	.	W	Y	S	F	V	G	A	G	I	T	T	F	V	P	P	H	E
Template Known Secondary structure						S	S														T		.			S																				T	T			T	T	T	T							S			G	.	G	G	G	G	S	T	T	S
Template Predicted Secondary structure																							.																																									.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T	D	Y
Query Conservation
Alig confidence																							.	.						.
Template Conservation																							.	.						.
Template Sequence		E	M	G	K	E	A	V	R	L	L	V	D	L	I	E	N	P	E	T	G	D	.	.	V	V	L	Q	G	.	Q	V	I	L	R	G	S	S	T	H
Template Known Secondary structure																	S						.	.						.						G	G	G
Template Predicted Secondary structure																							.	.						.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.		.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions