Job Description P0ACI3 Confidence 94.87% Date Thu Jan 5 11:18:15 GMT 2012 Rank 121 Aligned Residues 163 % Identity 14% Template c3jpyA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit epsilon-2; PDBTitle: crystal structure of the zinc-bound amino terminal domain of the nmda2 receptor subunit nr2b Resolution 3.21 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.																					.	.	.	.
Query SS confidence																								.	.	.	.	.	.																					.	.	.	.
Query Sequence		F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	.	.	.	.	.	.	K	Q	I	E	Q	A	L	A	D	V	D	V	P	I	V	G	V	G	G	S	.	.	.	.	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L
Query Conservation																								.	.	.	.	.	.																					.	.	.	.
Alig confidence																								.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		I	T	R	I	C	D	L	M	S	D	R	K	I	Q	G	V	V	F	A	D	D	T	D	Q	E	A	I	A	Q	I	L	D	F	I	S	A	Q	T	L	T	P	I	L	G	I	H	G	G	S	S	M	I	M	A	D	K	D	E	S	S	M	F	F	Q	F	G	P	S	I	E	Q	Q	A	S	V	M	L	N	I	M
Template Known Secondary structure												S			S								S			T													T	T								S	G	G	G	S				S			T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R
Query Conservation
Alig confidence													.	.	.	.																																						.	.	.	.	.	.
Template Conservation													.	.	.	.																																						.	.	.	.	.	.
Template Sequence		E	E	Y	D	W	Y	I	F	S	I	V	.	.	.	.	T	T	Y	F	P	G	Y	Q	D	F	V	N	K	I	R	S	T	I	E	N	S	F	V	G	W	E	L	E	E	V	L	L	L	D	M	S	S	.	.	.	.	.	.	K	I	Q	N	Q	L	K	K	L	Q	S	P	I	I	L	L	Y	C	T	K	E	E
Template Known Secondary structure				T	T								.	.	.	.			S	S	T	T														T		S	S															.	.	.	.	.	.	T						T	T				S						S
Template Predicted Secondary structure													.	.	.	.																																						.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	Y	I	F	E	V	A	N	S	V	G	L	T	G	Y	G	Y	T	W	I	V	P
Template Known Secondary structure											T	T	T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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