Job Description P0ACI3 Confidence 98.62% Date Thu Jan 5 11:18:15 GMT 2012 Rank 87 Aligned Residues 209 % Identity 11% Template c3i09A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution Resolution 1.80 Å

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		7	.	.	10	.	.	.	.	.	.	.				.		.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.								.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.		.															.	.	.	.	.													.	.	.	.	.	.	.																										.
Query SS confidence													.	.	.		.															.	.	.	.	.													.	.	.	.	.	.	.																										.
Query Sequence		R	I	T	L	L	F	N	A	N	K	A	.	.	.	Y	.	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	.	.	.	.	.	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	.
Query Conservation													.	.	.		.															.	.	.	.	.													.	.	.	.	.	.	.																										.
Alig confidence													.	.	.		.															.	.	.	.	.													.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		K	I	G	F	I	T	D	X	S	G	L	Y	A	D	I	D	G	Q	G	G	L	E	A	I	K	X	A	V	A	D	F	G	G	K	V	N	G	K	P	I	E	V	V	Y	A	D	H	Q	N	K	A	D	I	A	A	S	K	A	R	E	W	X	D	R	G	G	L	D	L	L	V	G	G	T	N	S	A	T	A	L
Template Known Secondary structure									S	S	S	T	T	T	T	T	S																T	S			T	T											T	T																S									S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.																	.	.	.
Query SS confidence		.	.																	.	.	.
Query Sequence		.	.	E	Q	A	L	A	D	V	D	V	P	I	V	G	V	G	G	.	.	.	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R
Query Conservation		.	.																	.	.	.
Alig confidence		.	.																	.	.	.																																									.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		S	X	N	Q	V	A	A	E	K	K	K	V	Y	I	N	I	G	A	G	A	D	T	L	T	N	E	Q	C	T	P	Y	T	V	H	Y	A	Y	D	T	X	A	L	A	K	G	T	G	S	A	V	V	K	Q	G	G	K	T	W	F	F	L	.	.	.	.	T	A	D	Y	A	F	G	K	A	L	E	K	N	T	A
Template Known Secondary structure											T							S				G	G	G	G	T	T	T			T	T					S																	T	T								.	.	.	.			S	S
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	.	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L
Query Conservation																																														.
Alig confidence																																		.	.	.	.	.								.
Template Conservation																																		.	.	.	.	.
Template Sequence		D	V	V	K	A	N	G	G	K	V	L	G	E	V	R	H	P	L	S	A	S	D	F	S	S	F	L	L	Q	A	Q	S	.	.	.	.	.	S	K	A	Q	I	L	G	L	A	N	A	G	G	D	T	V	N	A	I	K	A	A	K	E	F	G	I	T	K	T	X	K	L	A	A	L	L	X	F	I	N	D	V
Template Known Secondary structure							T	T											T	T		S												.	.	.	.	.	T			S																					T	T	G	G	G	T						S	S
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		224
Predicted Secondary structure
Query SS confidence
Query Sequence		T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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