Job Description P0ACI3 Confidence 100.00% Date Thu Jan 5 11:18:15 GMT 2012 Rank 35 Aligned Residues 255 % Identity 21% Template c3huuC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:transcription regulator like protein; PDBTitle: crystal structure of transcription regulator like protein from2 staphylococcus haemolyticus Resolution 1.95 Å

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		4	.	.	.	.	.	10	.	.	.	.							.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.
Predicted Secondary structure													.	.	.	.	.	.																															.	.	.	.																				.	.
Query SS confidence													.	.	.	.	.	.																															.	.	.	.																				.	.
Query Sequence		K	R	H	R	I	T	L	L	F	N	A	.	.	.	.	.	.	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	.	.	F	D	D	K	Q	I	E	Q
Query Conservation													.	.	.	.	.	.																															.	.	.	.																				.	.
Alig confidence													.	.	.	.	.	.																															.	.	.	.																				.	.
Template Conservation
Template Sequence		K	T	L	T	I	G	L	I	Q	K	S	S	A	P	E	I	R	Q	N	P	F	N	S	D	V	L	N	G	I	N	Q	A	C	N	V	R	G	Y	S	T	R	M	T	V	S	E	N	S	G	D	L	Y	H	E	V	K	T	M	I	Q	S	K	S	V	D	G	F	I	L	L	Y	S	L	K	D	D	P	I	E	H
Template Known Secondary structure											S								T	S																	T	T									S	S														T	T			S					S	S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	A	D	V	D	V	P	I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K
Query Conservation
Alig confidence																					.	.	.	.																																		.	.
Template Conservation																					.	.	.	.																																		.	.
Template Sequence		L	L	N	E	F	K	V	P	Y	L	I	V	G	K	S	L	N	Y	E	.	.	.	.	N	I	I	H	I	D	N	D	N	I	D	A	A	Y	Q	L	T	Q	Y	L	Y	H	L	G	H	R	H	I	L	F	L	Q	E	.	.	S	G	H	Y	A	V	T	E	D	R	S	V	G	F	K	Q	Y	C	D	D	V	K
Template Known Secondary structure						T	T							S				S		S	.	.	.	.	S																							T										.	.	S	S		B																	T	T
Template Predicted Secondary structure																					.	.	.	.																																		.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.												.																																									.
Template Conservation												.	.	.	.	.	.	.	.	.												.																																									.
Template Sequence		I	S	N	D	C	V	V	I	K	S	.	.	.	.	.	.	.	.	.	M	N	D	L	R	D	F	I	K	Q	Y	.	M	P	S	V	I	I	T	S	D	V	M	L	N	M	Q	L	L	N	V	L	Y	E	Y	Q	L	R	I	P	E	D	I	Q	T	A	T	F	N	T	S	F	.	L	T	E	N	A	T	P	S
Template Known Secondary structure											S	.	.	.	.	.	.	.	.	.									T	T		.			S					S	S														T	T			T	T	T	T							S		S		.				T	S	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.												.																																									.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.										.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	S	V	A	Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T	D	Y	R
Query Conservation
Alig confidence																												.	.	.	.								.
Template Conservation																												.	.	.	.								.
Template Sequence		Q	T	S	V	N	I	N	P	D	V	L	G	F	T	A	G	N	T	I	I	D	V	L	R	N	F	.	.	.	.	R	E	K	L	I	S	T	.	Q	I	V	E	R	V	S	T	T	K	I
Template Known Secondary structure																								T	T			.	.	.	.								.						T	T
Template Predicted Secondary structure																												.	.	.	.								.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions