Job Description P0ACI3 Confidence 98.48% Date Thu Jan 5 11:18:15 GMT 2012 Rank 93 Aligned Residues 195 % Identity 18% Template c3hutA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum Resolution 1.93 Å

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		7	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.								.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																.	.	.	.	.	.	.													.	.	.	.	.	.	.																								.	.
Query SS confidence													.	.	.																.	.	.	.	.	.	.													.	.	.	.	.	.	.																								.	.
Query Sequence		R	I	T	L	L	F	N	A	N	K	A	.	.	.	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	.	.	.	.	.	.	.	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	.	.
Query Conservation													.	.	.																.	.	.	.	.	.	.													.	.	.	.	.	.	.																								.	.
Alig confidence													.	.	.																.	.	.	.	.	.	.													.	.	.	.	.	.	.																								.	.
Template Conservation
Template Sequence		L	L	G	Y	E	L	P	L	T	G	A	N	A	A	Y	G	R	V	F	Q	E	A	A	R	L	Q	L	D	R	F	N	A	A	G	G	V	G	G	R	P	V	D	I	L	Y	A	D	S	R	D	D	A	D	Q	A	R	T	I	A	R	A	F	V	D	D	P	R	V	V	G	V	L	G	D	F	S	S	T	V	S
Template Known Secondary structure									S	S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
			68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.																										.
Query SS confidence		.																										.
Query Sequence		.	Q	I	E	Q	A	L	A	D	V	D	V	P	I	V	G	V	G	G	S	Y	H	L	A	E	S	.	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q
Query Conservation		.																										.
Alig confidence		.																										.																																		.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		X	A	A	G	S	I	Y	G	K	E	G	X	P	Q	L	S	P	T	A	A	H	P	D	Y	I	K	I	S	P	W	Q	F	R	A	I	T	T	P	A	F	E	G	P	N	N	A	A	W	X	I	G	D	G	F	T	S	V	A	V	I	.	.	.	.	G	V	T	T	D	W	G	L	S	S	A	Q	A	F	R	K
Template Known Secondary structure												T						S	S				G	G	G	T	T	S		T	T				S	S			G	G	G												T	T								.	.	.	.			S	S
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	.	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P
Query Conservation																																													.
Alig confidence																																		.	.	.	.	.							.
Template Conservation																																		.	.	.	.	.
Template Sequence		A	F	E	L	R	G	G	A	V	V	V	N	E	E	V	P	P	G	N	R	R	F	D	D	V	I	D	E	I	E	D	E	.	.	.	.	.	A	P	Q	A	I	Y	L	A	X	A	Y	E	D	A	A	P	F	L	R	A	L	R	A	R	G	S	A	L	P
Template Known Secondary structure						T	T											T	T															.	.	.	.	.			S						S															T	T
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions