Job Description P0ACI3 Confidence 99.97% Date Thu Jan 5 11:18:15 GMT 2012 Rank 54 Aligned Residues 292 % Identity 14% Template c3h75A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens Resolution 1.60 Å

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		6	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.
Predicted Secondary structure										.	.																																.	.	.	.																							.	.	.	.	.
Query SS confidence										.	.																																.	.	.	.																							.	.	.	.	.
Query Sequence		H	R	I	T	L	L	F	N	.	.	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	.	.	.	.	.	K	Q	I	E	Q	A	L	A
Query Conservation										.	.																																.	.	.	.																							.	.	.	.	.
Alig confidence										.	.																																.	.	.	.																							.	.	.	.	.
Template Conservation
Template Sequence		T	S	V	V	F	L	N	P	G	N	S	T	E	T	F	W	V	S	Y	S	Q	F	X	Q	A	A	A	R	D	L	G	L	D	L	R	I	L	Y	A	E	R	D	P	Q	N	T	L	Q	Q	A	R	E	L	F	Q	G	R	D	K	P	D	Y	L	X	L	V	N	E	Q	Y	V	A	P	Q	I	L	R	L	S	Q
Template Known Secondary structure										S		T	T																			T									T	T															S	S	S			S								S	S										T
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120								.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.
Query Sequence		D	V	D	V	P	I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	.	.	.	.	.	.	.	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V
Query Conservation																																																.	.	.	.	.	.	.
Alig confidence																					.	.																										.	.	.	.	.	.	.								.	.
Template Conservation																					.	.																																								.	.
Template Sequence		G	S	G	I	K	L	F	I	V	N	S	P	L	T	L	D	Q	R	W	.	.	I	G	S	X	V	G	D	D	E	E	A	G	Y	R	X	L	K	E	L	L	H	K	L	G	P	V	P	A	G	H	G	I	E	L	L	A	F	S	G	.	.	L	K	V	T	P	A	A	Q	L	R	E	R	G	L	R	R	A	L
Template Known Secondary structure		T	S									S				T	T	T			.	.																												S	S										S	.	.		T	T	S
Template Predicted Secondary structure																					.	.																																								.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	.	N	E	E	L	T	R	Y
Query Conservation																																																																										.
Alig confidence							.	.																																																																		.
Template Conservation							.	.
Template Sequence		A	E	H	P	Q	.	.	V	H	L	R	Q	L	V	Y	G	E	W	N	R	E	R	A	Y	R	Q	A	Q	Q	L	L	K	R	Y	P	K	T	Q	L	V	W	S	A	N	D	E	X	A	L	G	A	X	Q	A	A	R	E	L	G	R	K	P	G	T	D	L	L	F	S	G	V	N	S	S	P	E	A	L	Q	A
Template Known Secondary structure					T	T	.	.										T	T																	T	T							S	S														T	T			B	T	T	T	B						S
Template Predicted Secondary structure							.	.
Template SS confidence
		208	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		L	S	R	V	A	L	S	S	V	A	Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T	D	Y	R	S	L	T	D	P	A	.	V	I	Q	A	M	H	Y	I	R	N	H	A	C	K	G	I	K	V	D
Query Conservation																																																														.
Alig confidence																																			.	.	.	.	.	.	.	.																				.															.
Template Conservation																																			.	.	.	.	.	.	.	.																																			.
Template Sequence		L	I	D	G	K	L	S	V	L	E	A	G	H	F	T	L	G	G	W	A	L	V	A	L	H	D	D	A	L	G	L	D	A	.	.	.	.	.	.	.	.	R	R	L	G	G	P	D	W	Q	L	S	L	F	Q	A	L	T	P	A	Q	A	R	Q	L	L	R	L	G	D	Q	V	G	T	R	.	V	D	F	R
Template Known Secondary structure					T	S	S							G	G	G														T	T			S	.	.	.	.	.	.	.	.	T	T	T	T		S																						G	G	G	G	G	G	G	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.																																			.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.									.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.
		306	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	L	D	A	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	S	A	Q	G	K
Template Known Secondary structure				S		T	T
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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