Job Description P0ACI3 Confidence 98.18% Date Thu Jan 5 11:18:15 GMT 2012 Rank 97 Aligned Residues 195 % Identity 13% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		7	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.									.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																.	.	.	.	.	.	.													.	.	.	.	.	.	.	.																								.
Query SS confidence													.	.	.																.	.	.	.	.	.	.													.	.	.	.	.	.	.	.																								.
Query Sequence		R	I	T	L	L	F	N	A	N	K	A	.	.	.	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	.	.	.	.	.	.	.	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	.
Query Conservation													.	.	.																.	.	.	.	.	.	.													.	.	.	.	.	.	.	.																								.
Alig confidence													.	.	.																.	.	.	.	.	.	.													.	.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		V	I	G	C	P	A	P	L	T	G	I	V	A	A	D	G	I	E	F	Q	R	G	I	Q	M	A	A	D	E	I	N	A	V	G	G	I	L	G	R	P	I	E	L	V	F	A	D	T	Q	S	K	G	V	D	V	V	I	Q	S	A	Q	R	L	I	D	R	D	N	A	S	A	L	I	A	G	Y	N	L	E	N
Template Known Secondary structure										S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T			S					S			S	S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
				68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.								.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.									.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure		.	.																						.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query SS confidence		.	.																						.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query Sequence		.	.	Q	I	E	Q	A	L	A	D	V	D	V	P	I	V	G	V	G	G	S	Y	H	.	.	.	.	.	.	.	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	.	.	.	.	.	.	.	.	G	V	N	R	F	A	F	Y	G	L	P	E	S
Query Conservation		.	.																						.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Alig confidence		.	.																						.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		G	T	A	L	H	D	V	A	A	D	A	G	V	I	A	M	H	A	N	T	V	A	V	H	D	E	M	V	K	S	D	P	D	R	Y	W	G	T	F	Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I	A	I	I	.	.	.	.	T
Template Known Secondary structure		S											T																				T	T	T		T	T				S	S			T																	T	T	S				S	S	S						.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	.	.	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P
Query Conservation																																																															.	.
Alig confidence																																																.	.	.	.	.											.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	Y	D	V	S	L	F	E	T	V	A	I	P	V	S	D	W	G	P	T	L	A	K	L	R	A	.	.	.	.	.	D	P	P	A	V	I	V	V	T	H	F	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P	T	N
Template Known Secondary structure			S	S														G	G	G	G	T											S	S		S												.	.	.	.	.	S			S																				T	T	S			S
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		209	210
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		275	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions