Job Description P0ACI3 Confidence 100.00% Date Thu Jan 5 11:18:15 GMT 2012 Rank 38 Aligned Residues 239 % Identity 22% Template c3gybB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum Resolution 1.60 Å

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		5	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure										.																															.	.	.
Query SS confidence										.																															.	.	.
Query Sequence		R	H	R	I	T	L	L	F	.	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	.	.	.	E	D	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	E	Q	A	L	A	D	V	D	V	P	I
Query Conservation										.																															.	.	.
Alig confidence										.																															.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	L	I	A	V	L	I	D	D	Y	S	N	P	W	F	I	D	L	I	Q	S	L	S	D	V	L	T	P	K	G	Y	R	L	S	V	I	D	S	L	T	S	Q	A	G	T	D	P	I	T	S	A	L	S	X	R	P	D	G	I	I	I	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	D	I	P	D
Template Known Secondary structure										S		T	T	S	G	G	G												G	G	G	T								S	S	S	S		S	S	S								T	T			S							.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.													.	.	.	130
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.																																		.	.	.	.																										.	.
Template Conservation						.	.	.	.	.	.	.	.																																		.	.	.	.																										.	.
Template Sequence		F	T	V	P	.	.	.	.	.	.	.	.	D	S	L	P	D	S	V	A	N	D	D	F	R	G	A	E	I	A	T	K	H	L	I	D	L	G	H	T	H	I	A	H	L	.	.	.	.	R	V	G	S	G	A	G	L	R	R	F	E	S	F	E	A	T	X	R	A	H	G	L	E	P	.	.	L	S	N	D
Template Known Secondary structure		S				.	.	.	.	.	.	.	.	B																								T	T			S					.	.	.	.			S	S																	T	T				.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.																																		.	.	.	.																										.	.
Template SS confidence
		131	.	.	.									.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A	L	S	S	V	A	Q	G	A	R
Query Conservation
Alig confidence																																																																		.
Template Conservation																																																																		.
Template Sequence		Y	L	G	P	A	V	E	H	A	G	Y	T	E	T	L	A	L	L	K	E	H	P	E	V	T	A	I	F	S	S	N	D	I	T	A	I	G	A	L	G	A	A	R	E	L	G	L	R	V	P	E	D	L	S	I	I	G	Y	D	N	T	P	L	A	.	Q	T	R	L	I	N	L	T	T	I	D	D	N	S	I
Template Known Secondary structure				S																			T	T							S	S															T			T	T	T	T							S						.		S	T	T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T
Query Conservation
Alig confidence																					.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence		G	V	G	Y	N	A	A	L	L	L	L	S	X	L	E	I	X	H	T	.	.	.	.	.	.	.	L	Q	P	S	L	I	E	R	G	T	C
Template Known Secondary structure																			S		.	.	.	.	.	.	.									S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.								310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions