Job Description P0ACI3 Confidence 100.00% Date Thu Jan 5 11:18:15 GMT 2012 Rank 20 Aligned Residues 261 % Identity 15% Template c3g85A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum Resolution 1.84 Å

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		5	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.
Predicted Secondary structure											.	.																														.	.	.	.																												.	.
Query SS confidence											.	.																														.	.	.	.																												.	.
Query Sequence		R	H	R	I	T	L	L	F	N	.	.	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	.	.	.	.	E	D	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	.	.	E	Q	A	L	A	D	V
Query Conservation											.	.																														.	.	.	.																												.	.
Alig confidence											.	.																														.	.	.	.																												.	.
Template Conservation
Template Sequence		K	P	T	I	A	L	Y	W	S	S	D	I	S	V	N	I	I	S	R	F	L	R	G	L	Q	S	K	L	A	K	Q	N	Y	N	Y	N	V	V	I	C	P	Y	K	T	D	C	L	H	L	E	K	G	I	S	K	E	N	S	F	D	A	A	I	I	A	N	I	S	N	Y	D	L	E	Y	L	N	K	A	S	L
Template Known Secondary structure											T	T	S		G	G	G															T	T	T		S									T	T		G	G	G		G	G	G	S	T	T	T			S					S	S
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	P	I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V
Query Conservation
Alig confidence														.	.	.	.	.	.																																		.	.																											.
Template Conservation														.	.	.	.	.	.																																		.	.																											.
Template Sequence		T	L	P	I	I	L	F	N	R	L	S	N	.	.	.	.	.	.	K	Y	S	S	V	N	V	D	N	Y	K	X	G	E	K	A	S	L	L	F	A	K	K	R	Y	K	S	A	A	A	I	L	T	.	.	E	S	L	N	D	A	X	D	N	R	N	K	G	F	I	E	T	C	H	K	N	G	I	K	I	S	.
Template Known Secondary structure		S	S						S				S	.	.	.	.	.	.	S	S																					T	T			B							.	.			S	S																	T	T		B			.
Template Predicted Secondary structure														.	.	.	.	.	.																																		.	.																											.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	.	N	E	E	L	T	R	Y	L	S	R	V	A	L	S	S	V
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		E	N	H	I	I	A	A	E	N	S	I	H	G	G	V	D	A	A	K	K	L	X	K	L	K	N	T	P	K	A	L	F	C	N	S	D	S	I	A	L	G	V	I	S	V	L	N	K	R	Q	I	S	I	P	D	D	I	E	I	V	A	I	G	X	N	D	R	E	Y	T	E	F	S	T	P	P	V	T	I	V
Template Known Secondary structure		G	G	G						S	S												T	T	S	S	S			S					S	S														T	T			T	T	T	T									S							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R
Query Conservation
Alig confidence																																			.
Template Conservation																																			.
Template Sequence		D	I	P	I	E	E	X	A	G	T	C	I	S	L	V	E	K	L	I	N	R	D	I	E	N	P	T	S	I	L	F	D	G	.	P	L	I	L	R	N
Template Known Secondary structure																					T	T	S	S		S									.
Template Predicted Secondary structure																																			.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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