Job Description P0ACI3 Confidence 100.00% Date Thu Jan 5 11:18:15 GMT 2012 Rank 7 Aligned Residues 268 % Identity 17% Template c3dbiA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate Resolution 2.45 Å

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		4	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.
Predicted Secondary structure												.	.	.																																.	.	.	.																							.	.	.
Query SS confidence												.	.	.																																.	.	.	.																							.	.	.
Query Sequence		K	R	H	R	I	T	L	L	F	N	.	.	.	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	.	.	.	K	Q	I	E	Q	A	L
Query Conservation												.	.	.																																.	.	.	.																							.	.	.
Alig confidence												.	.	.																																.	.	.	.																							.	.	.
Template Conservation
Template Sequence		S	T	Q	T	L	G	L	V	V	T	N	T	L	Y	H	G	I	Y	F	S	E	L	L	F	H	A	A	R	X	A	E	E	K	G	R	Q	L	L	L	A	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	X	I	Y	P	R	F	L	S	V	D	E	I	D	D	I	I
Template Known Secondary structure				S								T	T	T	T	S	T	T																T	T									T	T	S														T	T		S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	V	D	V	P	I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R
Query Conservation
Alig confidence																				.	.	.	.																																	.	.
Template Conservation																				.	.	.	.																																	.	.
Template Sequence		D	A	H	S	Q	P	I	X	V	L	N	R	R	L	R	K	N	S	.	.	.	.	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	G	H	Q	E	I	A	F	L	T	G	.	.	S	X	D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L	A	Q	H	G	I	A
Template Known Secondary structure					S	S						S	S			S	S	S	G	.	.	.	.	G	G				B																T	T			S							.	.		T	T																		T	T
Template Predicted Secondary structure																				.	.	.	.																																	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A	L	S
Query Conservation
Alig confidence									.																																																														.
Template Conservation									.																																																														.
Template Sequence		L	N	E	K	L	I	A	.	N	G	K	W	T	P	A	S	G	A	E	G	V	E	X	L	L	E	R	G	A	K	F	S	A	L	V	A	S	N	D	D	X	A	I	G	A	X	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A	.	I	A	P	Y	T	V	P	A	L	S
Template Known Secondary structure				G	G	G			.				S	S														T	T				S					S	S														T	T			T	T	T	T							S			T	.	T	G	G	G	S	S	S
Template Predicted Secondary structure									.																																																														.
Template SS confidence
		214	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	A	Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T	D	Y	R	S
Query Conservation
Alig confidence																																		.	.
Template Conservation																																		.	.
Template Sequence		S	V	K	I	P	V	T	E	X	I	Q	E	I	I	G	R	L	I	F	X	L	D	G	G	D	F	S	P	P	K	T	F	.	.	S	G	K	L	I	R	R	D	S	L	I	A	P	S
Template Known Secondary structure																																	B	.	.								T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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