Job Description P0ACI3 Confidence 99.96% Date Thu Jan 5 11:18:15 GMT 2012 Rank 60 Aligned Residues 272 % Identity 11% Template c3d02A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution Resolution 1.30 Å

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		5	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.	.
Predicted Secondary structure												.																															.	.	.	.	.																								.	.	.	.
Query SS confidence												.																															.	.	.	.	.																								.	.	.	.
Query Sequence		R	H	R	I	T	L	L	F	N	A	.	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	.	.	.	.	Q	I	E	Q	A	L	A
Query Conservation												.																															.	.	.	.	.																								.	.	.	.
Alig confidence												.																															.	.	.	.	.																								.	.	.	.
Template Conservation
Template Sequence		E	K	T	V	V	N	I	S	K	V	D	G	X	P	W	F	N	R	X	G	E	G	V	V	Q	A	G	K	E	F	N	L	N	A	S	Q	V	G	P	S	S	T	D	A	P	Q	Q	V	K	I	I	E	D	L	I	A	R	K	V	D	A	I	T	I	V	P	N	D	A	N	V	L	E	P	V	F	K	K	A	R
Template Known Secondary structure										S		S	S																		T	T									S	S	S															T	T		S							S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	D	V	P	I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G
Query Conservation
Alig confidence																			.	.	.
Template Conservation																			.	.	.
Template Sequence		D	A	G	I	V	V	L	T	N	E	S	P	G	Q	P	S	A	.	.	.	N	W	D	V	E	I	I	D	N	E	K	F	A	A	E	Y	V	E	H	X	A	K	R	X	G	G	K	G	G	Y	V	I	Y	V	G	S	L	T	V	P	Q	H	N	L	W	A	D	L	L	V	K	Y	Q	K	E	H	Y	P	D	X
Template Known Secondary structure			T	T							S		T	T		T	T		.	.	.	S					S	S																	T	T	T									S		S	S																				T	T
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A	.	.	L
Query Conservation																																																																															.	.
Alig confidence																																																								.	.																						.	.
Template Conservation																																																								.	.
Template Sequence		H	E	V	T	R	R	X	P	V	A	E	S	V	D	D	S	R	R	T	T	L	D	L	X	K	T	Y	P	D	L	K	A	V	V	S	F	G	S	N	G	P	I	G	A	G	R	A	V	K	E	K	R	A	K	.	.	N	K	V	A	V	Y	G	X	X	I	P	S	Q	A	A	S	L	I	K	S	G	D	I	T
Template Known Secondary structure				S	S	S		B	S		T	T																	T	T							S	S	T	T												T	T		T	.	.	T	T																			T	S	S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260																	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	V	A	Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T	D	Y	R	S
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	I	T	Y	D	P	A	T	A	G	Y	A	L	A	A	V	A	S	T	L	L	N	G	K	T	I	E	P	G	F	E	L	K	E	L	G	K	A	E	V	D	S	D	K	H	I	I	R	F	H	K	V	L	L	V	N	K	D	N	I	D	S	L	Y
Template Known Secondary structure																								T	T					T	T				T	T	T							T	T	T	T												T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions