Job Description P0ACI3 Confidence 100.00% Date Thu Jan 5 11:18:15 GMT 2012 Rank 19 Aligned Residues 268 % Identity 19% Template c3bblA_ PDB info PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans Resolution 2.35 Å

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		5	.	.	.	.	10	.	.						.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure										.	.	.	.	.																															.	.	.	.																						.	.
Query SS confidence										.	.	.	.	.																															.	.	.	.																						.	.
Query Sequence		R	H	R	I	T	L	L	F	.	.	.	.	.	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	.	.	.	.	E	D	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	.	.	F	D	D	K	Q	I	E	Q	A	L
Query Conservation										.	.	.	.	.																															.	.	.	.																						.	.
Alig confidence										.	.	.	.	.																															.	.	.	.																						.	.
Template Conservation
Template Sequence		S	F	X	I	G	Y	S	W	T	Q	T	E	P	G	Q	V	N	H	I	L	D	Q	F	L	S	S	X	V	R	E	A	G	A	V	N	Y	F	V	L	P	F	P	F	S	E	D	R	S	Q	I	D	I	Y	R	D	L	I	R	S	G	N	V	D	G	F	V	L	S	S	I	N	Y	N	D	P	R	V	Q	F	L
Template Known Secondary structure														T	T		S			T															T	T										S	S	T	T											T	T			S						S			T	T
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	V	D	V	P	I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R
Query Conservation
Alig confidence																			.	.	.	.																																		.	.
Template Conservation																			.	.	.	.																																		.	.
Template Sequence		L	K	Q	K	F	P	F	V	A	F	G	R	S	N	P	D	W	.	.	.	.	D	F	A	W	V	D	I	D	G	T	A	G	T	R	Q	A	V	E	Y	L	I	G	R	G	H	R	R	I	A	I	L	A	W	.	.	P	E	D	S	R	V	G	N	D	R	L	Q	G	Y	L	E	A	X	Q	T	A	Q	L	P
Template Known Secondary structure				T	T							S			S	T	T		.	.	.	.																								T										.	.		T	T																		T	T
Template Predicted Secondary structure																			.	.	.	.																																		.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	.	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A	L
Query Conservation																											.
Alig confidence																											.																																															.
Template Conservation																																																																										.
Template Sequence		I	E	T	G	Y	I	L	R	G	E	G	T	F	E	V	G	R	A	X	T	L	H	L	L	D	L	S	P	E	R	R	P	T	A	I	X	T	L	N	D	T	X	A	I	G	A	X	A	A	A	R	E	R	G	L	T	I	G	T	D	L	A	I	I	G	F	D	D	A	P	X	V	.	Q	Y	L	F	P	P	L
Template Known Secondary structure				G	G	G						S	S													T	S		T	T	T	S		S					S	S														T	T			B	T	T	T	B						S			T	T	G	.	G	G	S	S	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	V	A	Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T	D	Y	R
Query Conservation
Alig confidence																																						.
Template Conservation																																						.
Template Sequence		S	S	V	R	Q	P	I	A	E	A	G	R	K	C	I	E	L	L	V	A	I	V	E	G	R	E	P	E	Q	K	H	I	L	L	Q	P	.	S	L	I	I	R	A	S	E	G	H	H
Template Known Secondary structure																								T	T				S									.					B		S	S	S	B
Template Predicted Secondary structure																																						.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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