Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACI3
Confidence100.00%DateThu Jan 5 11:18:15 GMT 2012
Rank17Aligned Residues262
% Identity19%Templatec2rgyA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.... .....20.........30.........40.... .....50.........60... ......70.......
Predicted Secondary structure 
.








.......



..




Query SS confidence 






.





























. . . . . . .


















. .













Query Sequence  ITLLFNA. NKAYDRQVVEGVGEYLQASQSEWDIFIEED. . . . . . . FRARIDKIKDWLGDGVIAD. . FDDKQIEQALADVD
Query Conservation 




  .       

 

                  .......    
        



  ..         
    
Alig confidence 






.





























.......


















..













Template Conservation 



           
  

   
   
    
                   
    
   
                  
Template Sequence  IGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDLDELHRXH
Template Known Secondary structure 
S
S
STT



SSS
TT
S

SSS

Template Predicted Secondary structure 


























Template SS confidence 















































































   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  VPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVY
Query Conservation 



 
               
  
       
   
   
   
  
             
  

       
      
Alig confidence 












....
































..

























.
Template Conservation     
         ....    
  
           
   
   
  
  ..         
  

            . 
Template Sequence  PKXVFLNRAFDAL. . . . PDASFCPDHRRGGELAAATLIEHGHRKLAVISG. . PFTASDNVERLDGFFDELARHGIARD. S
Template Known Secondary structure  SSSS

TTS....GGG


TT

SS..
TT
TTT

GG.G
Template Predicted Secondary structure 








....








..









.
Template SS confidence 















































































   168.170.........180 .........190.........200.........210... ......220.........230......... 240
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  QGLETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQ
Query Conservation                  
   
     
 

    
  
 
    
   
  

 





 
          
 



  
Alig confidence 
































































.













Template Conservation                      
       

    
  
 
    
   
      
 
 
 
   .        



  
Template Sequence  VPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDTXAVSALARFQQLGISVPGDVSVIGYDDDY. SAAYAAPALTSVHI
Template Known Secondary structure  S


SST


SSSTT

TTTT


T.TSTTSSS


Template Predicted Secondary structure 


























.




Template SS confidence 















































































   241........250.........260.........270.........280.........290.........300..... ....310.........
 
   238.240.........250.........260.........270.........
Predicted Secondary structure 























Query SS confidence 









































Query Sequence  GARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRSTDY
Query Conservation       
  

  
   
 
         
 
  

 
 

  
Alig confidence 



























..











Template Conservation       
  

  
   
 
        
..
  

 
 
   
Template Sequence  PTAELTQNAVRWLINQCYGTKWEIFREF. . PVTVSXRASVAR
Template Known Secondary structure 










..



SS


Template Predicted Secondary structure 







..





Template SS confidence 









































   320.........330.........340....... ..350.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions