Job Description P0ACI3 Confidence 100.00% Date Thu Jan 5 11:18:15 GMT 2012 Rank 26 Aligned Residues 264 % Identity 14% Template c2qu7B_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		K	R	H	R	I	T	L	L	F	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	E	Q	A	L	A	D	V	D	V	P
Query Conservation																																											.	.	.	.
Alig confidence																																											.	.	.	.
Template Conservation
Template Sequence		R	S	N	I	I	A	F	I	V	P	D	Q	N	P	F	F	T	E	V	L	T	E	I	S	H	E	C	Q	K	H	H	L	H	V	A	V	A	S	S	E	E	N	E	D	K	Q	Q	D	L	I	E	T	F	V	S	Q	N	V	S	A	I	I	L	V	P	V	K	S	K	F	Q	M	K	R	E	W	L	K	I	P
Template Known Secondary structure											S	S																	G	G	G	T									T	T															T	T									S	S	S	S					G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G
Query Conservation
Alig confidence													.	.	.	.																																	.	.
Template Conservation													.	.	.	.																																	.	.
Template Sequence		I	M	T	L	D	R	E	L	E	S	T	.	.	.	.	S	L	P	S	I	T	V	D	N	E	E	A	A	Y	I	A	T	K	R	V	L	E	S	T	C	K	E	V	G	L	L	L	.	.	A	N	P	N	I	S	T	T	I	G	R	K	N	G	Y	N	K	A	I	S	E	F	D	L	N	V	N	P	S	L	I
Template Known Secondary structure						S	S			T	T		.	.	.	.																						T	T	T			S						.	.			T	T	S																	T	T					G	G	G
Template Predicted Secondary structure													.	.	.	.																																	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		L	E	T	A	P	E	N	.	.	.	.	.	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A	L	S	S
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.															.	.																																									.
Template Conservation																												.	.																																									.
Template Sequence		H	Y	S	D	Q	Q	L	G	T	N	A	Q	I	Y	S	G	Y	E	A	T	K	T	L	L	S	K	.	.	G	I	K	G	I	V	A	T	N	H	L	L	L	L	G	A	L	Q	A	I	K	E	S	E	K	E	I	K	K	D	V	I	I	V	G	F	D	D	S	Y	.	W	N	E	I	Y	T	P	K	L	T	V
Template Known Secondary structure						S	S		S																		T	.	.	T								S														S	S			B	T	T	T	B						S				.					S	S	S
Template Predicted Secondary structure																												.	.																																									.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P	P	V	R	V	I	E	R	R	S	T	D	Y
Query Conservation
Alig confidence																													.	.						.
Template Conservation																													.	.						.
Template Sequence		I	S	Q	P	V	K	E	M	G	Q	V	A	A	K	M	I	Y	K	L	I	K	G	K	D	V	T	S	.	.	I	K	L	S	T	.	K	L	I	I	R	E	S	C	S	F
Template Known Secondary structure																						T	T						.	.						.						S	T	T	S
Template Predicted Secondary structure																													.	.						.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.	.	.	.		.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions