Job Description P0ACI3 Confidence 99.84% Date Thu Jan 5 11:18:15 GMT 2012 Rank 76 Aligned Residues 247 % Identity 15% Template c2qh8A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.							.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.										.	.	.	.
Query SS confidence																																		.	.	.	.	.	.										.	.	.	.
Query Sequence		K	R	H	R	I	T	L	L	F	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	.	.	.	.	.	.	E	W	D	I	F	I	E	E	D	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	E	Q	A	L
Query Conservation																																		.	.	.	.	.	.										.	.	.	.
Alig confidence																																		.	.	.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		K	T	A	K	V	A	V	S	Q	I	V	E	H	P	A	L	D	A	T	R	Q	G	L	L	D	G	L	K	A	K	G	Y	E	E	G	K	N	L	E	F	D	Y	K	T	A	Q	G	N	P	A	I	A	V	Q	I	A	R	Q	F	V	G	E	N	P	D	V	L	V	G	I	A	T	P	T	A	Q	A	L	V	S
Template Known Secondary structure											S	S																			T	T			B	T	T	T									T	T															T			S						S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.									.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.
Query Sequence		A	D	V	D	V	P	I	V	G	V	G	G	S	.	.	.	.	.	.	.	.	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q
Query Conservation															.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.																																									.	.	.
Template Conservation																																																															.	.	.
Template Sequence		A	T	K	T	I	P	I	V	F	T	A	V	T	D	P	V	G	A	K	L	V	K	Q	L	E	Q	P	G	K	N	V	T	G	L	S	D	L	S	P	V	E	Q	H	V	E	L	I	K	E	I	L	P	N	V	K	S	I	G	V	V	Y	.	.	.	N	P	G	E	A	N	A	V	S	L	X	E	L	L	K	L
Template Known Secondary structure				S	S	S								S		T	T	T	T	T	S		S		S	S	S			S	S																					S	T	T									.	.	.		T	T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.																																								.	.													.
Template Conservation																				.	.	.	.	.	.	.	.																																								.	.													.
Template Sequence		S	A	A	K	H	G	I	K	L	V	E	A	T	A	L	K	S	A	.	.	.	.	.	.	.	.	D	V	Q	S	A	T	Q	A	I	A	E	K	S	D	V	I	Y	A	L	I	D	N	T	V	A	S	A	I	E	G	X	I	V	A	A	N	Q	A	K	.	.	T	P	V	F	G	A	A	T	S	Y	V	E	.
Template Known Secondary structure						T	T									S	S	G	G	.	.	.	.	.	.	.	.	G									G	G	G		S						S						T	T											T	T	.	.						S	S						.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																																								.	.													.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	S	R	V	A	L	S	S	V	A	Q	G	A	R	Q	M	G	Y	Q	A	A	K	L	L	H	R	L	L	D	K	E	E	M	P	L	Q	R	I	L	V	P
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	R	G	A	I	A	S	L	G	F	D	Y	Y	Q	I	G	V	Q	T	A	D	Y	V	A	A	I	L	E	G	K	E	P	G	S	L	D	V	Q	V	A
Template Known Secondary structure		.	.	.	T	T		S																							T	T			G	G	G	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions