Job Description P0ACI3 Confidence 81.29% Date Thu Jan 5 11:18:15 GMT 2012 Rank 331 Aligned Residues 160 % Identity 11% Template c2q5cA_ PDB info PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum Resolution 1.49 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		T	K	R	H	R	I	T	L	L	F	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	.	D	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	E	Q	A	L	A	D	V	D	V	P	I	V
Query Conservation																																											.
Alig confidence													.	.	.	.	.																										.																														.	.
Template Conservation													.	.	.	.	.																																																								.	.
Template Sequence		S	L	S	L	K	I	A	L	I	S	Q	.	.	.	.	.	N	E	N	L	L	N	L	F	P	K	L	A	L	E	K	N	F	I	P	I	T	K	T	A	S	L	T	R	A	S	K	I	A	F	G	L	Q	D	E	V	D	A	I	I	S	R	G	A	T	S	D	Y	I	K	K	.	.	S	V	S	I	P	S	I
Template Known Secondary structure												S	.	.	.	.	.																T																					T	T	T		S														T	.	.	T		S	S
Template Predicted Secondary structure													.	.	.	.	.																																																								.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10						.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L	E
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	K	V	T	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	M	R	A	V	Y	N	A	K	R	F	.	.	.	.	.	G	N	E	L	A	L	I	A	Y	K	H	S	I	V	D	K	H	E	I	E	A	M	L	G	V	.	.	.	.	.	.	.	.	.	.	.	K	I	K	E	F	L	F
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.										G	G	G	.	.	.	.	.		S								S	S		S	S										T		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.														80	.	.	.	.	.	.	.	.	.	90	.						.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.												.	.	.	120	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P
Query Conservation
Alig confidence																	.	.	.	.	.										.	.	.	.	.
Template Conservation																	.	.	.	.	.										.	.	.	.	.
Template Sequence		S	S	E	D	E	I	T	T	L	I	S	K	V	K	T	.	.	.	.	.	E	N	I	K	I	V	V	S	G	.	.	.	.	.	K	T	V	T	D	E	A	I	K	Q	G	L	Y
Template Known Secondary structure			S	G	G	G											.	.	.	.	.	T	T								.	.	.	.	.										T	T
Template Predicted Secondary structure																	.	.	.	.	.										.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.	.	.	.	.	160

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions