Job Description P0ACI3 Confidence 99.78% Date Thu Jan 5 11:18:15 GMT 2012 Rank 79 Aligned Residues 223 % Identity 11% Template c2hqbA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans Resolution 2.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80
Predicted Secondary structure																																							.	.	.	.																																	.	.	.
Query SS confidence																																							.	.	.	.																																	.	.	.
Query Sequence		I	T	L	L	F	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	.	.	.	.	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	Q	I	E	Q	A	L	A	D	V	.	.	.	D	V	P	I
Query Conservation																																							.	.	.	.																																	.	.	.
Alig confidence								.																															.	.	.	.																																	.	.	.
Template Conservation								.
Template Sequence		V	G	L	L	V	E	.	D	T	G	W	N	R	K	A	Y	E	G	L	L	N	I	H	S	N	L	D	V	D	V	V	L	E	E	G	V	N	S	E	Q	K	A	H	R	R	I	K	E	L	V	D	G	G	V	N	L	I	F	G	H	G	H	A	F	A	E	Y	F	S	T	I	H	N	Q	Y	P	D	V	H	F
Template Known Secondary structure								.					T														S												S														T	T								S	T								T	T	T	T	S		T	T	S
Template Predicted Secondary structure								.
Template SS confidence
		2	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	G	G	S	Y	H	L	A	E	S	Y	P	P	V	H	Y	I	A	T	D	N	Y	A	L	V	E	S	A	F	L	H	L	K	E	K	G	V	N	R	F	A	F	Y	G	L	P	E	S	S	G	K	R	W	A	T	E	R	E	Y	A	F	R	Q	L	V	A	E	E	K	Y	R	G	V	V	Y	Q	G	L
Query Conservation
Alig confidence												.	.	.	.																																							.	.	.	.	.															.
Template Conservation												.	.	.	.																																							.	.	.	.	.															.
Template Sequence		V	S	F	N	G	E	V	K	G	E	.	.	.	.	N	I	T	S	L	H	F	E	G	Y	A	X	G	Y	F	G	G	X	V	A	A	S	X	S	E	T	H	K	V	G	V	I	A	A	F	P	W	Q	.	.	.	.	.	P	E	V	E	G	F	V	D	G	A	K	Y	X	N	.	E	S	E	A	F	V	R	Y
Template Known Secondary structure					S					S	S	.	.	.	.	S																						T		S	S	S							S		T	T		.	.	.	.	.													T	T	.
Template Predicted Secondary structure												.	.	.	.																																							.	.	.	.	.															.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	A	P	E	N	W	Q	H	A	Q	N	R	L	A	D	W	L	Q	T	L	P	P	Q	T	G	I	I	A	V	T	D	A	R	A	R	H	I	L	Q	V	C	E	H	L	H	I	P	V	P	E	K	L	C	V	I	G	I	D	N	E	E	L	T	R	Y	L	S	R	V	A	L	S	S	V	A	Q	G	A	R
Query Conservation
Alig confidence																					.	.																												.	.	.	.	.	.									.
Template Conservation																					.	.																												.	.	.	.	.	.									.
Template Sequence		V	G	E	W	T	D	A	D	K	A	L	E	L	F	Q	E	L	Q	K	.	.	E	Q	V	D	V	F	Y	P	A	G	D	G	Y	H	V	P	V	V	E	A	I	K	D	Q	G	D	F	.	.	.	.	.	.	A	I	G	Y	V	G	D	Q	.	A	D	L	G	G	S	T	I	L	T	S	T	V	Q	H	V	D
Template Known Secondary structure			S	S	S	S														T	.	.	T	T									T	T	T												T			.	.	.	.	.	.						S			.	S	S	S	S		S	S
Template Predicted Secondary structure																					.	.																												.	.	.	.	.	.									.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	G	Y	Q	A	A	K	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	Y	V	L	V	A	K	R	F
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions