Job Description P0ACI3 Confidence 74.22% Date Thu Jan 5 11:18:15 GMT 2012 Rank 390 Aligned Residues 74 % Identity 14% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.			.	.	.	80	.
Predicted Secondary structure																																																													.	.	.	.	.										.	.
Query SS confidence																																																													.	.	.	.	.										.	.
Query Sequence		T	L	L	F	N	A	N	K	A	Y	D	R	Q	V	V	E	G	V	G	E	Y	L	Q	A	S	Q	S	E	W	D	I	F	I	E	E	D	F	R	A	R	I	D	K	I	K	D	W	L	G	D	G	V	I	A	D	F	D	D	K	.	.	.	.	.	Q	I	E	Q	A	L	A	D	V	.	.	D	V	P	I	V
Query Conservation																																																													.	.	.	.	.										.	.
Alig confidence											.	.	.	.															.	.																															.	.	.	.	.										.	.
Template Conservation											.	.	.	.															.	.
Template Sequence		V	L	V	I	E	D	D	K	V	.	.	.	.	F	R	G	L	L	E	E	Y	L	S	M	K	G	I	.	.	K	V	E	S	A	E	R	G	K	E	A	Y	K	L	L	S	E	K	H	F	N	V	V	L	L	D	L	L	L	P	D	V	N	G	L	E	I	L	K	W	I	K	E	R	S	P	E	T	E	V	I
Template Known Secondary structure											.	.	.	.													T		.	.						S	S											S			S						S	B		S	S	S	B													T	T	S
Template Predicted Secondary structure											.	.	.	.															.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.					.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		82	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	G	S	Y	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	T	G	H	G	T
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions