 |
Job Description | P77172 | Confidence | 35.81% | Date | Thu Jan 5 12:25:57 GMT 2012 |
Rank | 376 | Aligned Residues | 81 |
% Identity | 9% | Template | c3gk0H_ |
PDB info |
PDB header:transferase | Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; |
PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei
|
Resolution | 2.28 Å |
|
 |
  |   |
621 | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | |
|
|
. | . | . | . | 690 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | A | L | T | N | V | K | Q | A | Q | I | T | L | Q | H | L | Q | E | L | G | C | Q | I | A | I | D | D | F | G | T | G | Y | A | S | Y | A | R | L | K | N | V | N | A | D | L | L | K | I | D | G | S | F | I | R | N | I | V | S | N | S | L | D | Y | Q | I | . |
. |
. |
V | A | S | I | C | H | L | A | R | M | K | K |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |
|   |   |
|   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|
|
| . |
|
|
|   |   |   |   |
|   |   |
|   |   |   |
|
|
|   |
|
|
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |
|
|   |   |
|   |   |
|
|
Template Sequence |   |
D | V | V | G | H | F | D | A | V | R | A | A | C | K | Q | L | A | D | A | G | V | R | V | S | L | F | . |
I | D | P | D | E | A | Q | I | R | A | A | H | E | T | G | A | P | V | I | E | L | H | T | G | R | Y | A | D | A | H | D | A | A | E | Q | Q | R | E | F | E | R | I | A | T | G | V | D | A | G | I | A | L | G |
Template Known Secondary structure |   |
| T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  | . |  |
| S |
|  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |
|
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | |
. | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . |
  |
  |   |
698 | . | 700 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
M | L | V | V | A |
Query Conservation |   |
  |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
Template Sequence |   |
L | K | V | N | A |
Template Known Secondary structure |   |
|  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
  |   |
194 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|