Job Description P77172 Confidence 100.00% Date Thu Jan 5 12:25:57 GMT 2012 Rank 2 Aligned Residues 362 % Identity 20% Template c3gfzB_ PDB info PDB header:hydrolase, signaling protein Chain: B: PDB Molecule:klebsiella pneumoniae blrp1; PDBTitle: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex Resolution 2.05 Å

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		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.									.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390						.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.																																											.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.																																											.	.	.	.	.
Query Sequence		I	Q	R	L	A	Y	V	D	P	V	V	H	L	P	N	V	R	A	L	N	R	A	L	.	.	.	.	.	.	.	.	R	D	A	P	W	S	A	L	C	Y	L	R	I	P	G	M	E	M	L	V	K	N	Y	G	I	M	L	R	I	Q	Y	K	Q	K	L	S	H	W	L	S	P	L	.	.	.	.	.	L	E
Query Conservation																									.	.	.	.	.	.	.	.																																											.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.																						.	.																				.	.	.	.	.
Template Conservation																																																						.	.
Template Sequence		L	T	T	L	I	Y	R	S	Q	V	H	P	D	R	P	P	V	D	L	D	A	L	V	H	R	A	S	S	K	N	L	P	L	G	I	T	G	I	L	L	F	N	G	L	Q	F	F	Q	V	L	E	G	.	.	T	E	E	A	L	E	S	L	F	S	E	I	Q	S	D	P	R	H	R	D	V	V	E	L	M	R
Template Known Secondary structure													T	T	S																				T									S	S									.	.														T		T	T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	E	D	V	Y	Q	L	S	G	N	D	L	A	L	R	L	N	T	E	S	H	Q	E	R	I	T	A	L	D	S	H	L	K	Q	F	R	F	F	W	D	G	M	P	M	Q	P	Q	I	G	V	S	Y	C	Y	V	R	S	P	V	N	H	I	Y	L	L	L	G	E	L	N	T	V	A	E	L	S	I	V	T
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Y	S	A	Y	R	R	F	H	G	T	G	M	R	I	L	D	L	R	L	F	E	T	D	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	E	I	L	R	F	S	T	F	G	V	T	E	P	V	N	D	R	M	F	R	L	L	S	A	F	I	A
Template Known Secondary structure					S	S		S			S	S	S						G	G	G			T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	S		G	G	G	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																										.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.			.	.	.	.	.	530	.	.	.	.	.	.		.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.													.
Query SS confidence																																																						.	.													.
Query Sequence		N	A	P	E	N	M	Q	R	R	G	A	M	Y	L	Q	R	E	L	K	D	K	V	A	M	M	N	R	L	Q	Q	A	L	E	H	N	H	F	F	L	M	A	Q	P	I	T	G	M	R	G	D	V	Y	.	.	H	E	I	L	L	R	M	K	G	E	N	D	.	E	L	I	S	P	D	S	F	L	P	V	A	H
Query Conservation																																																						.	.													.
Alig confidence																	.	.	.	.	.	.	.	.																														.	.													.
Template Conservation																	.	.	.	.	.	.	.	.
Template Sequence		D	G	G	R	Y	C	L	P	E	P	L	Q	P	S	R	.	.	.	.	.	.	.	.	W	M	M	M	A	P	Q	H	L	P	G	Q	P	C	Q	F	A	L	Q	A	I	V	E	P	A	K	K	R	V	S	S	F	E	A	L	I	R	S	P	T	G	G	S	P	V	E	M	F	A	A	I	A	A	E	D	R	Y
Template Known Secondary structure			G	G	G	G				G	G	G		G	G	G	.	.	.	.	.	.	.	.										T	T	S	S											T	T	T	T												T	T	S									T	S		G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.									150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590		.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		E	F	G	L	S	S	S	I	D	M	W	V	I	E	H	T	L	Q	F	M	A	E	N	R	A	K	M	P	A	H	R	F	A	I	N	L	S	P	T	S	V	.	C	Q	A	R	F	P	V	E	V	S	Q	L	L	A	K	Y	Q	I	E	A	W	Q	L	I	F	E	V	T	E	S	N	A	L	T	N	V	K	Q
Query Conservation																																											.
Alig confidence																			.	.	.	.	.	.	.	.																	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		R	F	D	L	E	S	K	A	Y	A	F	A	L	A	G	Q	L	.	.	.	.	.	.	.	.	P	L	G	K	H	Q	L	A	I	N	L	L	P	G	S	L	Y	H	H	P	D	A	V	G	W	L	M	D	S	L	L	A	A	G	L	R	P	D	Q	V	L	I	E	V	T	E	T	E	V	I	T	C	F	D	Q
Template Known Secondary structure							T											T	.	.	.	.	.	.	.	.	T			S														S	S	S	S												T	T			G	G	G												T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.									230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	I	T	L	Q	H	L	Q	E	L	G	C	Q	I	A	I	D	D	F	G	T	G	Y	A	S	Y	A	R	L	K	N	V	N	A	D	L	L	K	I	D	G	S	F	I	R	N	I	V	S	N	S	L	D	Y	Q	I	V	A	S	I	C	H	L	A	R	M	K	K	M	L	V	V	A	E	Y	V	E	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	K	V	L	K	A	L	R	V	A	G	M	K	L	A	I	D	D	F	G	A	G	Y	S	G	L	S	L	L	T	R	F	Q	P	D	K	I	K	V	D	A	E	L	V	R	D	I	H	I	S	G	T	K	Q	A	I	V	A	S	V	V	R	C	C	E	D	L	G	I	T	V	V	A	E	G	V	E	T	L
Template Known Secondary structure													T									T	S	S	S			S	T								S										T	T	G	G	G	B																		T										S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		709	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	R	E	A	V	L	S	L	G	I	D	Y	M	Q	G	Y	L	I	G	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	W	C	W	L	Q	S	V	G	I	R	L	F	Q	G	F	L	F	S	R	P
Template Known Secondary structure										T	T						S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions