Job Description P77172 Confidence 55.84% Date Thu Jan 5 12:25:57 GMT 2012 Rank 276 Aligned Residues 184 % Identity 13% Template c2fptA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial; PDBTitle: dual binding mode of a novel series of dhodh inhibitors Resolution 2.40 Å

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		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.													.	620	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	M	W	V	I	E	H	T	L	Q	F	M	A	E	N	R	A	K	M	P	A	H	R	F	A	I	N	L	S	P	T	S	V	C	Q	A	R	F	P	V	E	V	S	Q	L	L	A	K	Y	Q	I	E	A	W	Q	L	I	F	E	V	T	.	.	.	.	.	.	.	.	.	.	.	.	E	S	N	A	L	T
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		L	S	V	V	E	H	R	L	R	A	R	Q	Q	K	Q	A	K	L	T	E	D	G	L	P	L	G	V	N	L	G	K	N	K	T	S	.	V	D	A	A	E	D	Y	A	E	G	V	R	V	L	G	P	L	A	D	Y	L	V	V	N	V	S	S	P	N	T	A	G	L	R	S	L	Q	G	K	A	E	L	R	R
Template Known Secondary structure											T	T										T	T											T	T		.	S														G	G	G		S									T	T	S	T	T	S	G	G	G	G	S
Template Predicted Secondary structure																																					.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		625	.	.	.	.	630	.	.	.	.	.	.	.	.						.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.		.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.															.	680	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	K	Q	A	Q	I	T	L	Q	H	L	Q	E	.	.	.	.	.	L	G	C	Q	I	A	I	D	D	F	G	T	G	Y	A	S	Y	.	A	R	L	K	N	V	N	A	D	L	L	K	I	D	G	S	F	I	R	N	I	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	L	D	Y	Q
Query Conservation																.	.	.	.	.																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	T	K	V	L	Q	E	R	D	G	L	R	R	V	H	R	P	A	V	L	V	K	I	A	P	D	L	T	S	Q	D	K	E	D	I	A	S	V	V	K	E	L	G	I	D	G	L	I	V	T	N	T	T	V	S	R	P	A	G	L	Q	G	A	L	R	S	E	T	G	G	L	S	G	K	P	L	R	D	L
Template Known Secondary structure												T	S		G	G	G										S																		T										B	S				T	T				T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		685	.	.	.	.	690	.	.	.	.	.	.	.			.	.	700	.	.	.	.		.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.				.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.
Predicted Secondary structure															.	.								.																				.	.	.
Query SS confidence															.	.								.																				.	.	.
Query Sequence		I	V	A	S	I	C	H	L	A	R	M	K	K	.	.	M	L	V	V	A	E	Y	.	V	E	N	E	E	I	R	E	A	V	L	S	L	G	I	D	Y	M	Q	.	.	.	G	Y	L	I	G	K	P	Q	P	L	I	D	T	L	N	E	I	E
Query Conservation															.	.								.																				.	.	.
Alig confidence															.	.								.																				.	.	.
Template Conservation
Template Sequence		S	T	Q	T	I	R	E	M	Y	A	L	T	Q	G	R	V	P	I	I	G	V	G	G	V	S	S	G	Q	D	A	L	E	K	I	R	A	G	A	S	L	V	Q	L	Y	T	A	L	T	F	W	G	P	P	V	V	G	K	V	K	R	E	L	E
Template Known Secondary structure													T	T	T		S						S	S			S											T		S					S								T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions