Job Description P77172 Confidence 43.30% Date Thu Jan 5 12:25:57 GMT 2012 Rank 340 Aligned Residues 109 % Identity 15% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	N	V	K	Q	A	Q	I	T	L	Q	H	L	Q	E	L	G	C	Q	I	A	I	D	D	F	G	T	G	Y	A	S	Y	A	R	L	K	N	V	N	A	D	L	L	K	I	D	G	S	F	I	R	N	I	V	S	N	S	L	D	Y	Q	I	V	A	S	I	C	H	L	A	R	M	K	K	M	L	V	V	A	.
Query Conservation																																																																																	.
Alig confidence																								.	.																							.	.	.	.					.														.	.										.
Template Conservation																								.	.																							.	.	.	.					.														.	.
Template Sequence		D	D	K	V	F	R	G	L	L	E	E	Y	L	S	M	K	G	I	K	V	E	S	.	.	A	E	R	G	K	E	A	Y	K	L	L	S	E	K	H	F	N	V	V	L	L	D	.	.	.	.	L	L	L	P	.	D	V	N	G	L	E	I	L	K	W	I	K	E	.	.	R	S	P	E	T	E	V	I	V	I
Template Known Secondary structure																		T						.	.		S	S											S			S						.	.	.	.	S	B		S	.	S	S	B											.	.			T	T	S
Template Predicted Secondary structure																								.	.																							.	.	.	.					.														.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	V	E	N	E	E	I	R	E	A	V	L	S	L	G	I	D	Y	M	Q	G	Y	L	I	G	K	P	Q	P	L	I	D	T	L	N	E	I	E	P	I	R	E
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		T	G	H	G	T	I	K	T	A	V	E	A	M	K	M	G	A	Y	D	F	.	.	.	.	L	T	K	P	C	M	L	E	E	I	E	L	T	I	N	K	A	I	E
Template Known Secondary structure				T	T										T	T	T					.	.	.	.				S
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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