 |
Job Description | P77172 | Confidence | 84.32% | Date | Thu Jan 5 12:25:57 GMT 2012 |
Rank | 122 | Aligned Residues | 70 |
% Identity | 11% | Template | c1lwhA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:4-alpha-glucanotransferase; |
PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase
|
Resolution | 2.60 Å |
|
 |
  |   |
625 | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | |
. | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | V | K | Q | A | Q | I | T | L | Q | H | L | Q | E | L | G | C | Q | . |
I | A | I | D | D | F | G | T | G | Y | A | S | Y | A | R | L | K | N | V | N | A | D | L | L | K | I | D | G | S | F | I | R | N | I | V | S | N | S | L | D | Y | Q | I | V | A | S | I | C | H | L | A | R | M | K | K | M | L | V | V | A | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   | . |
|   |
|
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |
|
|
|
|   |   |
|
|
|   |   |
|   |
|   |
|
| . | . | . |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|
|   |   |   | . | . | . | . | . | . | . | . |
|
|   |   |
|
|
|   |
|
|   |   |   |
|   |   |
|
|   |
|
|
|
|
Template Sequence |   |
D | F | R | G | L | K | N | A | V | S | Y | L | K | E | L | G | I | D | F | V | W | L | M | P | V | . |
. |
. |
F | S | S | I | S | F | H | G | Y | D | V | V | D | F | Y | S | F | K | A | E | Y | . |
. |
. |
. |
. |
. |
. |
. |
G | S | E | R | E | F | K | E | M | I | E | A | F | H | D | S | G | I | K | V | V | L | D |
Template Known Secondary structure |   |
|  |  |  |  |  |  | T |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
|
|
| . | . | . |  |  |
| S | S | S | S |
|
| S |
| S |  |  |  |  |  |
| G | G | G | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
|
. | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
  |
  |   |
704 | . |
Predicted Secondary structure |   |
 |
|
Query SS confidence |   |
|
|
Query Sequence |   |
Y | V |
Query Conservation |   |
|
|
Alig confidence |   |
|
|
Template Conservation |   |
  |
|
Template Sequence |   |
L | P |
Template Known Secondary structure |   |
 |
|
Template Predicted Secondary structure |   |
 |  |
Template SS confidence |   |
|
|
  |   |
90 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|