Job Description P77172 Confidence 37.22% Date Thu Jan 5 12:25:57 GMT 2012 Rank 366 Aligned Residues 110 % Identity 15% Template c1kgsA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Resolution 1.50 Å

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		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	V	K	Q	A	Q	I	T	L	Q	H	L	Q	E	L	G	C	Q	I	A	I	D	D	F	G	T	G	Y	A	S	Y	A	R	L	K	N	V	N	A	D	L	L	K	I	D	G	S	F	I	R	N	I	V	S	N	S	L	D	Y	Q	I	V	A	S	I	C	H	L	A	R	M	K	K	M	L	V	V	A	E
Query Conservation
Alig confidence																					.	.																													.	.	.	.	.
Template Conservation																					.	.																													.	.	.	.	.
Template Sequence		D	E	R	D	L	A	D	L	I	T	E	A	L	K	K	E	X	F	T	.	.	V	D	V	C	Y	D	G	E	E	G	X	Y	X	A	L	N	E	P	F	D	V	V	I	L	D	I	X	L	.	.	.	.	.	P	V	H	D	G	W	E	I	L	K	S	X	R	E	S	G	V	N	T	P	V	L	X	L	T	A
Template Known Secondary structure		S	S														T	T			.	.					S	S											S			S						S			.	.	.	.	.	S	S	S												T	T										S
Template Predicted Secondary structure																					.	.																													.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	E	N	E	E	I	R	E	A	V	L	S	L	G	I	D	Y	M	Q	G	Y	L	I	G	K	P	Q	P	L	I	D	T	L	N	E	I	E	P	I	R	E
Query Conservation
Alig confidence													.						.	.	.	.
Template Conservation													.						.	.	.	.
Template Sequence		L	S	D	V	E	Y	R	V	K	G	L	.	N	X	G	A	D	.	.	.	.	D	Y	L	P	K	P	F	D	L	R	E	L	I	A	R	V	R	A	L	I	R
Template Known Secondary structure		S									T		.					S	.	.	.	.					S	S
Template Predicted Secondary structure													.						.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions