 |
Job Description | P77172 | Confidence | 85.16% | Date | Thu Jan 5 12:25:57 GMT 2012 |
Rank | 110 | Aligned Residues | 70 |
% Identity | 21% | Template | c1jibA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:neopullulanase; |
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
|
Resolution | 3.30 Å |
|
 |
  |   |
625 | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | |
. | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | V | K | Q | A | Q | I | T | L | Q | H | L | Q | E | L | G | C | Q | . |
I | A | I | D | D | F | G | T | G | Y | A | S | Y | A | R | L | K | N | V | N | A | D | L | L | K | I | D | G | S | F | I | R | N | I | V | S | N | S | L | D | Y | Q | I | V | A | S | I | C | H | L | A | R | M | K | K | M | L | V | V | A | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   | . |
|   |
|
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |   |
|
|
|
|
|
|   |
|
|
|   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |
|
| . | . | . |   |   |   |
|
|   |   |
|
|   |   |   | . | . | . | . | . | . | . | . |
|
|   |   |
|
|
|   |
|
|   |   |   |
|   |   |
|
|   |
|
|
|
|
Template Sequence |   |
D | L | K | G | V | I | D | R | L | P | Y | L | E | E | L | G | V | T | A | L | Y | F | T | P | I | F | A | S | P | S | H | H | K | Y | . |
. |
. |
D | T | A | D | Y | L | A | I | D | P | Q | F | . |
. |
. |
. |
. |
. |
. |
. |
G | D | L | P | T | F | R | R | L | V | D | E | A | H | R | R | G | I | K | I | I | L | D |
Template Known Secondary structure |   |
|  |  |  |  |  |  | T |  |  |  |  |  |  |  | T |
| S |  |  |  |  |
|
|
|  |  |
| S | S | S | S |
|
| . | . | . | S |
| S |  |  |  |  |  |
| T | T | T | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
171 | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | |
|
|
. | . | . | . | . | 210 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |
  |
  |   |
704 | . |
Predicted Secondary structure |   |
 |
|
Query SS confidence |   |
|
|
Query Sequence |   |
Y | V |
Query Conservation |   |
|
|
Alig confidence |   |
|
|
Template Conservation |   |
  |
|
Template Sequence |   |
A | V |
Template Known Secondary structure |   |
 |
|
Template Predicted Secondary structure |   |
 |  |
Template SS confidence |   |
|
|
  |   |
240 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|