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Job DescriptionP37440
Confidence100.00%DateThu Jan 5 11:55:36 GMT 2012
Rank53Aligned Residues250
% Identity36%Templatec2dteB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:glucose 1-dehydrogenase related protein; PDBTitle: structure of thermoplasma acidophilum aldohexose dehydrogenase (aldt)2 in complex with nadh
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE
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Template Sequence  FSDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH. . . . . . . . . . DPGEAKYDHIECDVTNPDQVKASIDHIFKEY
Template Known Secondary structure 
GGGTT
T
SSTT
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S
SS

TT
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   2.......10.........20.........30.........40 .........50.........60.........70.
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  GRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKA
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Template Sequence  GSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQA. SIITKNASAYVTSKH
Template Known Secondary structure  S









B
TTTS
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GGG.TS

TTB
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Query Sequence  AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIA. . . RQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASD
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Template Sequence  AVIGLTKSIALDYAPL. LRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASR
Template Known Secondary structure  TTT.S
SBSS
S
STTSS
B
SG
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   151........160...... ...170.........180.........190.........200.........210.........220.........
 
   238.240.........250.........260..
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Query Sequence  ESSYLTGTQNVIDGGSTLPETVSVG
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Template Sequence  EASFITGTCLYVDGGLSIRAPISTP
Template Known Secondary structure  GGTT

S
STTGGG

S



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   230.........240.........250....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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