Job Description P43319 Confidence 0.86% Date Thu Jan 5 12:02:15 GMT 2012 Rank 83 Aligned Residues 133 % Identity 17% Template c3n42F_ PDB info PDB header:viral protein Chain: F: PDB Molecule:e1 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex (furin2 cleavage) of chikungunya virus. Resolution 3.00 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	I	K	N	N	T	V	Y	S	A	A	T	Q	T	G	V	C	Q	G	D	T	S	R	Y	G	P	V	N	I	G	A	N	T	T	F	T	L	Y	V	T	K	P	F	L	G	S	M	T	I	P	K	T	D	I	A	V	I	K	G	A	W	V	D	G	M	G	S	P	S	T	G	D	F	H	D	L	V	K	L
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		G	D	V	Y	N	M	D	Y	P	P	F	G	A	G	R	P	G	Q	F	G	D	I	Q	S	R	T	P	E	S	K	D	V	Y	A	N	T	Q	L	V	L	Q	R	P	A	A	G	T	V	H	V	P	Y	S	Q	A	P	S	G	F	K	Y	W	L	K	E	R	G	A	S	L	Q	H	.	.	.	.	.	.	.	.
Template Known Secondary structure		T										T	T				T	T	S	T	T	S				S	S	T	T		S															T	T																	T	T	S								.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.										.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.
Query Sequence		S	I	Q	G	N	L	T	A	P	Q	S	C	K	I	N	Q	G	D	.	.	.	.	.	.	.	.	.	V	I	K	V	N	F	G	F	I	N	G	Q	K	F	T	T	R	N	A	M	P	D	G	F	T	P	V	D	F	D	I	T	Y	D	C	G	D	T	S	K	I	K	N	S	L	Q	M	R	I	D	G	T
Query Conservation																				.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.							.																										.	.
Template Conservation		.	.	.	.	.	.																												.																										.	.
Template Sequence		.	.	.	.	.	.	T	A	P	F	G	C	Q	I	A	T	N	P	V	R	A	V	N	C	A	V	G	N	M	P	I	S	I	.	D	I	P	E	A	A	F	T	R	V	V	D	A	P	S	L	T	D	M	S	C	E	V	P	A	.	.	C	T	H	S	S	D	F	G	G	V	A	I	I	K	Y	A	A	S
Template Known Secondary structure		.	.	.	.	.	.			G	G	G					T	T	T	T								S							.				G	G	G			B	T	T	T	S													.	.		B		S	S	S												S
Template Predicted Secondary structure		.	.	.	.	.	.																												.																										.	.
Template SS confidence
								254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions