Job Description P43319 Confidence 0.88% Date Thu Jan 5 12:02:15 GMT 2012 Rank 80 Aligned Residues 116 % Identity 10% Template c2wd6B_ PDB info PDB header:cell adhesion Chain: B: PDB Molecule:agglutinin receptor; PDBTitle: crystal structure of the variable domain of the2 streptococcus gordonii surface protein sspb Resolution 2.30 Å

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		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	Q	G	D	V	I	K	V	N	F	G	F	I	N	G	Q	K	F	T	T	R	N	A	M	P	D	G	F	T	P	V	D	F	D	I	T	Y	D	C	G	D	T	S	K	I	K	N	S	L	Q	M	R	I	D	G	T	T	G	V	V	D	Q	Y	N	L	V	A	R	R	R	S	S	D	N	V	P	D	V	G
Query Conservation
Alig confidence																									.	.	.	.	.											.																				.	.	.	.
Template Conservation																									.	.	.	.	.											.																				.	.	.	.
Template Sequence		L	E	K	D	K	P	V	D	V	T	Y	T	G	L	K	N	S	S	F	N	G	K	K	.	.	.	.	.	I	S	K	V	V	Y	T	Y	T	L	.	K	E	T	G	F	N	D	G	T	K	M	T	M	F	A	S	S	D	P	.	.	.	.	T	V	T	A	W	Y	N	D	Y	F	T	S	T	N	I	N	V	K
Template Known Secondary structure				T	T												S				T	T			.	.	.	.	.											.					S	T	T	S	S								S	S	T	.	.	.	.	T	T							T	T	T
Template Predicted Secondary structure																									.	.	.	.	.											.																				.	.	.	.
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.						580	.	.	.	.	.	.	.	.	.		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.					.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.												.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	I	E	N	L	G	G	G	V	A	N	I	P	F	Q	N	G	I	L	P	V	D	P	S	G	H	G	T	.	.	.	.	.	.	.	.	.	.	.	V	N	M	R	A	W	P	V	N	L	V	G	G	E	L	E	T
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	F	Y	D	E	E	G	Q	L	M	N	L	T	G	G	L	V	N	F	S	S	L	N	R	G	N	G	S	G	A	I	D	K	D	A	I	E	S	V	R	N	F	N	G	R	Y	I	P	I	S	G	S	S	I	K	I
Template Known Secondary structure							T	T	S		B				T	T										B	S		S		T	T	T		S								S		S	S					B	T	T		S
Template Predicted Secondary structure
Template SS confidence
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions