Job Description P43319 Confidence 1.56% Date Thu Jan 5 12:02:15 GMT 2012 Rank 36 Aligned Residues 142 % Identity 14% Template c2alaA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:structural polyprotein (p130); PDBTitle: crystal structure of the semliki forest virus envelope protein e1 in2 its monomeric conformation. Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	I	K	N	N	T	V	Y	S	A	A	T	Q	T	G	V	C	Q	G	D	T	S	R	Y	G	P	V	N	I	G	A	N	T	T	F	T	L	Y	V	T	K	P	F	L	G	S	M	T	I	P	K	T	D	I	A	V	I	K	G	A	W	V	D	G	M	G	S	P	S	T	G	D	F	H	D	L	V	K	L
Query Conservation
Alig confidence																																																													.	.
Template Conservation																																																													.	.
Template Sequence		D	E	V	F	N	Q	D	F	P	P	Y	G	S	G	Q	P	G	R	F	G	D	I	Q	S	R	T	V	E	S	N	D	L	Y	A	N	T	A	L	K	L	A	R	P	S	P	G	M	V	H	V	P	Y	T	Q	T	P	S	G	F	.	.	K	Y	W	L	K	E	K	G	T	A	L	N	T	K	A	P	F	G	C
Template Known Secondary structure		S										T	T				T	T	S	T	T	S			B	S	S	S	S		S						S									T	T	S	S												.	.											G	G	G			G	G	G
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	Q	G	N	L	T	A	P	Q	S	C	K	I	N	Q	G	D	V	I	K	V	N	F	G	F	I	N	G	Q	K	F	T	T	R	N	A	M	P	D	G	F	T	P	V	D	F	D	I	T	Y	D	C	G	D	T	S	K	I	K	N	S	L	Q	M	R	I	D	G	T
Query Conservation
Alig confidence																.	.	.								.																										.	.
Template Conservation																.	.	.								.																										.	.
Template Sequence		Q	I	K	T	N	P	V	R	A	M	N	C	A	V	.	.	.	G	N	I	P	V	S	M	.	N	L	P	D	S	A	F	T	R	I	V	E	A	P	T	I	I	D	L	T	C	T	V	A	T	.	.	C	T	H	S	S	D	F	G	G	V	L	T	L	T	Y	K	T	N
Template Known Secondary structure					T	T	T	T				T				.	.	.	S							.				G	G	G	S			T	T	T	S													.	.		B	S	S	S	S	S											S
Template Predicted Secondary structure																.	.	.								.																										.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions