Job Description P43319 Confidence 1.12% Date Thu Jan 5 12:02:15 GMT 2012 Rank 59 Aligned Residues 131 % Identity 18% Template c1ld4O_ PDB info PDB header:virus Chain: O: PDB Molecule:spike glycoprotein e1; PDBTitle: placement of the structural proteins in sindbis virus Resolution 11.40 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	I	K	N	N	T	V	Y	S	A	A	T	Q	T	G	V	C	Q	G	D	T	S	R	Y	G	P	V	N	I	G	A	N	T	T	F	T	L	Y	V	T	K	P	F	L	G	S	M	T	I	P	K	T	D	I	A	V	I	K	G	A	W	V	D	G	M	G	S	P	S	T	G	D	F	H	D	L	V	K	L
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		G	L	V	Y	N	Y	D	F	P	E	Y	G	A	M	K	P	G	A	F	G	D	I	Q	A	T	S	L	T	S	K	D	L	I	A	S	T	D	I	R	L	L	K	P	S	A	K	N	V	H	V	P	Y	T	Q	A	S	S	G	F	E	M	W	K	N	N	S	G	R	P	L	Q	E	.	.	.	.	.	.	.	.
Template Known Secondary structure		T										T	T				S	S	S	S		S	S	B	B	S	S	T	T					B												S	S	S											T	T	T	T	T	T	T	S					S	S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		5182	.	.	.	.	.	.	.	5190	.	.	.	.	.	.	.	.	.	5200	.	.	.	.	.	.	.	.	.	5210	.	.	.	.	.	.	.	.	.	5220	.	.	.	.	.	.	.	.	.	5230	.	.	.	.	.	.	.	.	.	5240	.	.	.	.	.	.	.	.	.	5250	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.										.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.
Query Sequence		S	I	Q	G	N	L	T	A	P	Q	S	C	K	I	N	Q	G	D	.	.	.	.	.	.	.	.	.	V	I	K	V	N	F	G	F	I	N	G	Q	K	F	T	T	R	N	A	M	P	D	G	F	T	P	V	D	F	D	I	T	Y	D	C	G	D	T	S	K	I	K	N	S	L	Q	M	R	I	D	G	T	T
Query Conservation																				.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.							.																		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																												.																		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	T	A	P	F	G	C	K	I	A	V	N	P	L	R	A	V	D	C	S	Y	G	N	I	P	I	S	I	.	D	I	P	N	A	A	F	I	R	T	S	D	A	P	L	V	S	.	.	.	.	.	.	.	T	V	K	C	E	V	S	E	C	T	Y	S	M	A	T	L	Q	Y	V	S	D	R
Template Known Secondary structure		.	.	.	.	.	.	S		G	G	G					S	S	S					S				S							.				T	T	T	S		S		T	T	S					.	.	.	.	.	.	.																					S	S
Template Predicted Secondary structure		.	.	.	.	.	.																												.																		.	.	.	.	.	.	.
Template SS confidence
								5254	.	.	.	.	.	5260	.	.	.	.	.	.	.	.	.	5270	.	.	.	.	.	.	.	.	.	5280		.	.	.	.	.	.	.	.	.	5290	.	.	.	.	.	.	.								.	.	5300	.	.	.	.	.	.	.	.	.	5310	.	.	.	.	.	.	.	.	.
		282	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		5325	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions