Job Description P77432 Confidence 100.00% Date Thu Jan 5 12:29:13 GMT 2012 Rank 2 Aligned Residues 500 % Identity 20% Template c3jvpA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans Resolution 2.31 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.										.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																					.														.	.	.	.	.	.	.	.	.
Query SS confidence																					.														.	.	.	.	.	.	.	.	.
Query Sequence		Y	Y	L	M	A	L	D	A	G	T	G	S	I	R	A	V	I	F	D	.	L	E	G	N	Q	I	A	V	G	Q	A	E	W	.	.	.	.	.	.	.	.	.	R	H	L	A	V	P	D	V	P	G	S	M	E	F	D	L	N	K	N	W	Q	L	A	C	E	C	M	R	Q	A	L	H	N	A	G	I	A	P
Query Conservation																					.														.	.	.	.	.	.	.	.	.
Alig confidence																					.														.	.	.	.	.	.	.	.	.																																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		K	Y	T	I	G	V	D	Y	G	T	E	S	G	R	A	V	L	I	D	L	S	N	G	Q	E	L	A	D	H	V	T	P	Y	R	H	G	V	I	D	Q	Y	L	P	N	T	N	I	K	L	G	H	E	W	A	L	Q	H	P	L	D	Y	V	E	V	L	T	T	S	V	P	A	V	M	K	E	D	A	.	.	.
Template Known Secondary structure											S	S									T	T	T												T	T			B	S	S	B	S	T	T	S			B			T	T														T	T											.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Y	I	A	A	V	S	A	C	S	M	R	E	G	I	V	L	Y	N	N	E	G	A	P	I	W	A	.	.	.	.	.	.	.	.	.	.	.	.	C	A	N	V	D	A	R	A	A	R	E	V	S	E	L	K	E	L	H	N	N	T	F	E	N	E	V	Y	R	A	T	G	Q	T	L	A	L	S	A	I	P
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	V	I	G	I	G	V	D	F	T	A	C	T	M	L	P	V	D	E	E	G	Q	P	L	C	L	L	A	Q	Y	K	D	N	P	H	S	W	V	K	L	W	K	H	H	A	A	Q	D	K	A	N	A	I	N	E	M	A	E	K	R	G	E	A	F	L	P	R	Y	G	G	K	I	S	S	E	W	M	I	A
Template Known Secondary structure		S											S	S							T	T	S		B	G	G	G	S	S	S	T	T	S	S	G	G	G	S				T	T			T	T															T		T	T	G	G	G	G	T	T				S	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.
Query Sequence		R	L	L	W	L	A	H	H	R	S	D	I	Y	R	Q	A	S	T	I	T	M	I	S	D	W	L	A	Y	M	L	S	G	E	L	A	V	D	P	S	N	A	G	T	T	G	L	L	D	L	T	T	R	D	W	K	P	A	L	L	D	M	A	G	L	R	A	D	I	L	S	.	.	.	.	.	.	P	V	K	E
Query Conservation																																																																								.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	W	Q	I	L	D	E	A	E	D	V	Y	N	R	T	D	Q	F	L	E	A	T	D	W	I	V	S	Q	M	T	G	K	I	V	K	N	S	C	T	A	G	Y	K	A	I	W	H	K	R	E	G	Y	P	S	N	E	F	F	K	A	L	D	P	R	L	E	H	L	T	T	T	K	L	R	G	D	I	V	P
Template Known Secondary structure																		S															S	S												S			B	T	T	T	B	S								T	T		G	G	G	T	T	S	T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	T	L	L	G	V	V	S	S	Q	A	A	E	L	C	G	L	K	A	G	T	P	V	V	V	G	G	G	D	V	Q	L	G	C	L	G	L	G	V	V	R	P	A	Q	T	A	V	L	G	G	T	F	W	Q	Q	V	V	N	L	A	A	P	V	T	D	P	E	M	N	V	R	V	N	P	H	V	I	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	E	R	A	G	G	L	L	P	E	M	A	E	K	M	G	L	N	P	G	I	A	V	A	V	G	N	V	D	A	H	A	A	V	P	A	V	G	V	T	T	P	G	K	L	V	M	A	M	G	T	S	I	C	H	M	L	L	G	E	K	E	Q	E	V	E	G	M	C	G	V	V	E	D	G	I	I	P	G
Template Known Secondary structure		T	T	S														T	S		T	T									T	T	T	T					T	T			S	S								S	S	S								S	S					T	T		S					T	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																														.																											.	.
Query SS confidence																														.																											.	.
Query Sequence		M	V	Q	A	E	S	I	S	F	F	T	G	L	T	M	R	W	F	R	D	A	F	C	A	E	E	K	L	.	I	A	E	R	L	G	I	D	T	Y	T	L	L	E	E	M	A	S	R	V	P	P	G	S	W	G	.	.	V	M	P	I	F	S	D	R	M	R	F	K	T	W	Y	H	A	A	P	S	F	I	N
Query Conservation																														.																											.	.
Alig confidence																														.																											.	.
Template Conservation
Template Sequence		Y	L	G	Y	E	A	G	Q	S	A	V	G	D	I	F	A	W	F	V	K	H	G	V	S	A	A	T	F	D	E	A	Q	E	K	G	V	N	V	H	A	L	L	E	E	K	A	S	Q	L	R	P	G	E	S	G	L	L	A	L	D	W	W	N	G	N	R	S	I	L	V	D	T	E	L	S	G	M	L	L	G
Template Known Secondary structure		S								S		S											T	S											T	T												T	S	S		T	T	S	S								T	T				T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		L	S	I	D	P	D	K	C	N	K	A	T	L	F	R	A	L	E	E	N	A	A	I	V	S	A	C	N	L	Q	Q	I	A	D	F	S	N	I	H	P	S	S	L	V	F	A	G	G	.	G	S	K	G	K	L	W	S	Q	I	L	A	D	V	S	G	L	P	V	N	I	P	V	V	K	E	A	T	A	L	G
Query Conservation																																																		.
Alig confidence						.	.	.																												.														.
Template Conservation						.	.	.																												.
Template Sequence		Y	T	L	Q	.	.	.	T	K	P	E	E	I	Y	R	A	L	L	E	A	T	A	F	G	T	R	A	I	V	D	A	F	H	G	.	R	G	V	E	V	H	E	L	Y	A	C	G	G	L	P	Q	K	N	H	L	L	M	Q	I	F	A	D	V	T	N	R	E	I	K	V	A	A	S	K	Q	T	P	A	L	G
Template Known Secondary structure				T	T	.	.	.																											T	.	T	T										S	S																	T	S					B			S	S
Template Predicted Secondary structure						.	.	.																												.
Template SS confidence
		405	.	.	.				.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		460	.	.	.	.	.	.	.	.	.	470					.	.	.	.	.	.	.	.	.	480	.	.	.	.		.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.															.
Query SS confidence													.	.	.	.															.
Query Sequence		C	A	I	A	A	G	V	G	A	G	I	.	.	.	.	F	S	S	M	A	E	T	G	E	R	L	V	R	W	.	E	R	T	H	T	P	D	P	E	K	H	E	L	Y	Q	D	S	R	D	K	W	Q	A	V	Y	Q	D	Q	L	G	L	V	D	H
Query Conservation													.	.	.	.															.
Alig confidence													.	.	.	.															.
Template Conservation
Template Sequence		A	A	M	F	A	S	V	A	A	G	S	E	V	G	G	Y	D	S	I	E	E	A	A	K	K	M	G	R	V	K	D	E	T	F	K	P	I	P	E	H	V	A	I	Y	E	K	L	Y	Q	E	Y	V	T	L	H	D	Y	F	G	R	G	A	N	D
Template Known Secondary structure												S	S	S	S	S		S												B		S			B																										S	S	S
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.