Return to main results Retrieve Phyre Job Id

Job DescriptionP77432
Confidence100.00%DateThu Jan 5 12:29:13 GMT 2012
Rank18Aligned Residues455
% Identity16%Templatec3h6eB_
PDB info PDB header:transferaseChain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60.........70.........80.........
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  SKYYLMALDAGTGSIRAVIFDLEGNQIAVGQAEWRHLAVPDVPGSMEFDLNKNWQLACECMRQALHNAGIAPEYIAAVSA
Query Conservation     










 

 
 
  
  
                
  


           
             
 

  
Alig confidence 




































...























......









Template Conservation 
    
 





 


 
 
  
  
          ...   
  
 
       
   
   ......    
 


 
Template Sequence  STGATIVIDLGKTLSKVSLWDLDGRXLDRQVRPSIPL. . . EIDGIRRLDAPDTGRWLLDVLSRY. . . . . . ADHPVTTIVP
Template Known Secondary structure 


SSTTS



...TT

GGG......TTS


Template Predicted Secondary structure 











...







......

Template SS confidence 















































































   2.......10.........20.........30........ .40.........50.........60.. .......70..
 
   90.........100........ .110.........120.........130.........140.........150.........160........
Predicted Secondary structure 










.




















Query SS confidence 


















.



























































Query Sequence  CSMREGIVLYNNEGAPIWA. CANVDARAAREVSELKELHNNTFENEVYRATGQTLALSAIPRLLWLAHHRSDIYRQASTI
Query Conservation 
      
  
  
 

  .
 
 
 
       
               

         

 

    

        
Alig confidence 










.






.



















...

































.

Template Conservation 
      
  
. 
  
 
 
 
 
 
             ...       
          

 

    

    
.  
Template Sequence  VGHGAGIAALT. DGRLAFPPLDYEQSIPEAVXADYRSQRD. . . PFARTGSPALPDGLNIGSQLWWLDQLHPDVXANA. TL
Template Known Secondary structure 
SS
.TTSS

B
TTS


TT

...





STTSS
T
.
Template Predicted Secondary structure 






.











...











.
Template SS confidence 















































































   73......80... ......90.........100.........110. ........120.........130.........140..... ..
 
   169170.........180......... 190.........200.........210.........220.........230.........240.......
Predicted Secondary structure 



.



































Query SS confidence 




















.

























































Query Sequence  TMISDWLAYMLSGELAVDPSN. AGTTGLLDLTTRDWKPALLDMAGLRADILSPVKETGTLLGVVSSQAAELCGLKAGTPV
Query Conservation 
   


   


    
 
 .

 
 
 
     
    
   

    

 
       
 
    
   

  
 

Alig confidence 




















.






















..
































Template Conservation 
    

   


    
  
 

 
 
 
     
   
     ..   

 
       
 
    
   

  
 

Template Sequence  LPWAQYWAWFLTGRAVSEVTSLGCHSDLWDPQDGDFSPXAKRLGW. . AARFAPIVRAGDTVGALLPAIAERTGLSPDVQV
Template Known Secondary structure  S


B
TTT
SSTTTT
T
..GGGB

B

TTS

T

TT
Template Predicted Secondary structure 






















..





















Template SS confidence 















































































   148.150.........160.........170.........180.........190.. .......200.........210.........220.....
 
   248.250.........260...... ...270.........280.........290.... .....300.........310.........320.
Predicted Secondary structure 








....















..

Query SS confidence 


















. . . .



























. .


























Query Sequence  VVGGGDVQLGCLGLGVVRP. . . . AQTAVLGGTFWQQVVNLAAPVTDPEMNV. . RVNPHVIPGMVQAESISFFTGLTMRWF
Query Conservation    
  
  

  
 
    ....
    
 


                  ..                    
  
 
 
Alig confidence 


















....



























..


























Template Conservation    
  
  

 

 
             
 

          
                              
      
Template Sequence  LAGLHDSNAALLAARGFAEIADNEATVLSTGTWFIAXRLPATPVDTATLPEARDCLVNVDVHGRPVPSARFXGGREIETL
Template Known Secondary structure 

TTSTTTTTSS
SSS
SS



TT

GGGT
TTS

Template Predicted Secondary structure 






































Template SS confidence 















































































   226...230.........240.........250.........260.........270.........280.........290.........300.....
 
   322.......330.........340.........350....... ..360.........370.........380.........390.........
Predicted Secondary structure 














..





















Query SS confidence 



































. .









































Query Sequence  RDAFCAEEKLIAERLGIDTYTLLEEMASRVPPGSWG. . VMPIFSDRMRFKTWYHAAPSFINLSIDPDKCNKATLFRALEE
Query Conservation                        
   
         .. 

   
   
       
   

       
   
 

 

Alig confidence 









........

















..











..












...











Template Conservation            ........                 
   

   
   
 ..        
    ...            
Template Sequence  IEIDTRRVDI. . . . . . . . KPDQPALLAAVPEVLRHGRXILPTLXRGFGPY. . PHGRFAWINRPED. . . WFERRAAACLYA
Template Known Secondary structure 
SGGG
TT
........GGGTT
S
SSTTSSS
..TT


S

SS...
Template Predicted Secondary structure 


........



















..








...

Template SS confidence 















































































   306...310..... ....320.........330.........340....... ..350.........360 .........370..
 
   400.........410.........420.........430.........440.........450.........460.........470.........
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  NAAIVSACNLQQIADFSNIHPSSLVFAGGGSKGKLWSQILADVSGLPVNIPVVKEATALGCAIAAGVGAGIFSSMAETGE
Query Conservation 


         
    
     
 
 

 
 
    

 


 
 

      
  
 



 
    
       
  
Alig confidence 



.......
































..























..........
Template Conservation 
   .......            
   



 
    
  



..
       
  
 


  
     ..........
Template Sequence  ALVA. . . . . . . DTALDLIGSTGRILVEGRFAEADVFVRALASLR. . PDCAVYTANAHSFGALRLIDPGLR. . . . . . . . . .
Template Known Secondary structure  .......TT

S
SGGGG

..SSS
S


GGG
TT

..........
Template Predicted Secondary structure  .......











..








..........
Template SS confidence 















































































   373... ...380.........390.........400......... 410.........420.........430...
 
   480.........490.........500.........510...
Predicted Secondary structure 





Query SS confidence 

































Query Sequence  RLVRWERTHTPDPEKHELYQDSRDKWQAVYQDQL
Query Conservation            
       
   
     

    
Alig confidence  .
































Template Conservation  .         
          
        
   
Template Sequence  . PQGELVRIEPLDTGWADLDTYRNRWQAEVEAAK
Template Known Secondary structure  .
SS












Template Predicted Secondary structure  .








Template SS confidence 

































   437..440.........450.........460.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions