Job Description P37641 Confidence 99.78% Date Thu Jan 5 11:56:14 GMT 2012 Rank 14 Aligned Residues 199 % Identity 24% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	K	L	R	I	D	I	P	P	G	I	A	K	S	L	L	L	P	R	L	S	E	F	L	Y	L	H	P	G	I	E	L	E	L	S	S	H	D	R	P	V	D	I	L	H	D	G	F	D	C	V	I	R	T	G	A	L	P	E	D	G	V	I	A	R	P	L	G	K	L	T	M	V	N	C	A	S	P	H
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	A	I	G	C	L	F	P	L	L	S	D	F	K	R	S	Y	P	H	I	D	L	H	I	S	T	H	N	N	R	V	D	P	A	A	E	G	L	D	Y	T	I	R	Y	G	G	G	A	W	H	D	T	D	A	Q	Y	L	C	S	A	L	X	S	P	L	C	.	.	.
Template Known Secondary structure																	T													T	T										S								T		S								S			T	T															B	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	T	R	F	G	Y	P	Q	S	P	D	D	L	T	S	H	A	I	V	R	Y	T	P	H	L	G	V	H	P	L	G	F	E	V	A	S	V	N	G	V	Q	W	F	K	S	G	G	M	L	T	V	N	S	S	E	N	Y	L	T	A	G	L	A	G	L	G	I	I	Q	I	P	R	I	A	V	R	E	A	L
Query Conservation
Alig confidence																										.	.	.
Template Conservation																										.	.	.
Template Sequence		S	P	T	L	A	S	Q	I	Q	T	P	A	D	I	L	K	F	P	L	L	R	S	Y	R	.	.	.	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G	V	A	I	A	P	V	R	X	F	T	H	L	L
Template Known Secondary structure							T	T		S	S	G	G	G	G	G	G	S						S		.	.	.	T	T									T	T						T	T	S						S											T	T	S		B					G	G	G
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	G	R	L	I	E	V	L	P	G	Y	R	A	E	P	L	S	L	S	L	V	Y	P	Q	R	R	E	L	S	R	R	V	N	L	F	M	Q	W	L	A	G	V	M	K	E
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		S	S	E	R	I	V	Q	P	F	L	T	Q	I	D	L	.	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G	V	L	H	K
Template Known Secondary structure			T	T	S	S	B							B		S	.									T	T	S
Template Predicted Secondary structure																	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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