Job Description P37641 Confidence 100.00% Date Thu Jan 5 11:56:14 GMT 2012 Rank 7 Aligned Residues 277 % Identity 15% Template c3fzvC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa Resolution 2.71 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	K	I	H	A	M	Q	L	F	I	K	V	A	E	L	E	S	F	S	R	A	A	D	F	F	A	L	P	K	G	S	V	S	R	Q	I	Q	A	L	E	H	Q	L	G	T	Q	L	L	Q	R	T	T	R	R	V	K	L	T	P	E	G	M	T	Y	Y	Q	R	A	K	D	V	L	S	N	L	S	E	L	D
Query Conservation
Alig confidence				.																																																																									.	.	.	.	.
Template Conservation				.																																																																									.	.	.	.	.
Template Sequence		Y	T	.	L	R	Q	L	K	Y	F	V	T	T	V	E	C	G	S	V	A	E	A	S	R	K	L	Y	I	A	Q	P	S	I	S	T	A	V	K	G	L	E	E	S	F	G	V	Q	L	F	S	L	T	P	A	G	A	R	F	Y	R	K	A	Q	E	L	L	R	X	A	H	E	F	E	Q	N	.	.	.	.	.
Template Known Secondary structure				.														S	S								T	T																		T	S																										T				.	.	.	.	.
Template Predicted Secondary structure				.																																																																									.	.	.	.	.
Template SS confidence
		4	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		G	L	F	Q	Q	D	A	T	S	I	S	G	K	L	R	I	D	I	P	P	G	I	A	K	S	L	L	L	P	R	L	S	E	F	L	Y	L	H	P	G	I	E	L	E	L	S	S	H	D	R	P	V	D	I	L	H	D	G	F	D	C	V	I	R	T	G	A	L	P	E	D	G	.	.	.	.	V	I	A	R
Query Conservation																																																																										.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																																		.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	D	V	I	A	G	Q	I	D	I	G	C	F	E	T	V	A	P	L	Y	L	P	G	L	I	A	G	F	R	Q	A	Y	P	G	V	E	I	R	I	R	D	G	E	Q	Q	E	L	V	Q	G	L	T	S	G	R	F	D	L	A	F	L	Y	E	H	D	L	D	S	T	I	E	T	E	P
Template Known Secondary structure		.	.	.	.	.	.	.													T	T	T																	T	T																				T	S		S						S	S	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	G	K	L	T	M	V	N	C	A	S	P	H	Y	L	T	R	F	G	Y	P	Q	S	P	D	D	L	T	S	H	A	I	V	R	Y	T	P	H	L	G	V	H	P	L	G	F	E	V	A	S	V	N	G	V	Q	W	F	K	S	G	G	M	L	T	V	N	S	S	E	N	Y	L	T	A	G	L	A	G	L
Query Conservation
Alig confidence																																							.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence		L	X	P	P	Q	R	P	H	A	L	L	P	E	G	H	R	F	A	G	Q	A	Q	V	S	L	R	D	L	C	L	E	P	X	I	L	L	D	.	.	.	.	V	Q	P	S	R	T	Y	F	V	S	L	F	E	E	L	G	L	T	P	N	I	A	F	S	S	P	S	I	E	X	V	R	G	X	V	G	Q	G	F
Template Known Secondary structure		S	S			B								T	T		T	T	T	T	S	S								T	T	S							.	.	.	.		T	T												T	T										S											T	T	S
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		G	I	I	Q	I	P	R	I	A	V	R	E	A	L	R	A	G	.	R	L	I	E	V	L	P	G	Y	R	A	E	P	L	S	L	S	L	V	Y	P	Q	R	R	E	L	S	R	R	V	N	L	F	M	Q	W	L	A	G	V	M
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		G	F	S	L	L	V	T	R	P	H	S	E	C	T	Y	D	G	K	K	V	V	X	V	D	L	A	E	P	V	S	T	S	G	L	A	A	A	W	L	K	R	A	Q	L	T	K	P	A	R	L	F	V	D	Y	C	R	E	Q	L
Template Known Secondary structure			B								S			B		T	T	S		B							S	S				B									S	S	S																	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions