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Job DescriptionP37641
Confidence99.59%DateThu Jan 5 11:56:14 GMT 2012
Rank34Aligned Residues203
% Identity13%Templatec2h9bB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s)
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   91........100.........110.........120.........130.. .......140.........150.........160.......
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Query Sequence  SGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDRPV. . . DILHDGFDCVIRTGALPEDGVIARPLGKLTMVNCA
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Template Sequence  EKTIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKHSLLRNERLMVAV
Template Known Secondary structure 


GGGGGTT
TT


TS
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TT
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   8990.........100.........110.........120.........130.........140.........150.........160........
 
   168.170........ .180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  SPHYLTRFGYP. . QSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRIA
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Template Sequence  HASHPLNQMKDKGVHLNDLIDEKILLYPS. SPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPAST
Template Known Secondary structure  TTSGGGGGTTT
B
GGGSTTS


.SSSSSTTT


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   169170.........180.........190....... ..200.........210.........220.........230.........240.......
 
   246...250.........260.........270.........280.........290.......
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Query Sequence  VREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY
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Template Sequence  QS. . IQLFNLSYVPLLDPDAITPIYIAVRNM. EESTYIYSLYETIRQIYAYE
Template Known Secondary structure  GG..


TTB
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   248. 250.........260.........270...... ...280.........290......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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