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Job DescriptionP37641
Confidence99.57%DateThu Jan 5 11:56:14 GMT 2012
Rank35Aligned Residues206
% Identity13%Templatec2f78A_
PDB info PDB header:gene regulationChain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8990.........100.........110.........120.........130.........140.........150 .........160....
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Query Sequence  SISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPE. . . . DGVIARPLGKLTMV
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Template Sequence  SVEKTIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKRTLLRNERLMV
Template Known Secondary structure 

S
GGGGGTT
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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   165....170.........180.........190.........200.........210.........220.........230.........240....
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Query Sequence  NCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI
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Template Sequence  AVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPAS
Template Known Secondary structure  TTSGGGGGTTT
B
GGGSTTS



SSSSSTTT


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BGG
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   167..170.........180.........190.........200.........210.........220.........230.........240......
 
   245....250.........260.........270.........280.........290.......
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Query Sequence  AVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY
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Template Sequence  TQS. . IQLFNLSYVPLLDPDAITPIYIAVRNM. EESTYIYSLYETIRQIYAYE
Template Known Secondary structure  GGG..


TTB

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   247.. 250.........260.........270...... ...280.........290......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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